sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1N32-A1209-A1341
X
>1FJG-A1209-A1341
X
>3KNH-A1200-A1332
X
>2UUA-A1209-A1341
X
>3R8N-A1231-A1362
X
>2J03-A2734-A1650
X
>2J01-A2734-A1650
X
>3OI0-A1056-A12
X
>3OHY-A1056-A12
X
>2J00-A1056-A12
X
>2J02-A1056-A12
X
</seq>
<hsp>
0 1:0.0953636352206
0 2:0.297652810589
0 3:0.128331665424
0 4:0.175816570149
0 5:0.798175805697
0 6:0.804244585265
0 7:0.878243638522
0 8:0.828920219942
0 9:0.888230201914
0 10:0.923508420918
1 2:0.238578542549
1 3:0.157153975529
1 4:0.184678990565
1 5:0.83956190384
1 6:0.84599287325
1 7:0.907777483685
1 8:0.864166911568
1 9:0.926523062603
1 10:0.95610173019
2 3:0.331199121999
2 4:0.331616140106
2 5:0.916100940971
2 6:0.921421914704
2 7:0.941207122317
2 8:0.92264635409
2 9:0.993199149424
2 10:0.999998841827
3 4:0.118168977912
3 5:0.775865165109
3 6:0.781222005158
3 7:0.877234078205
3 8:0.817544935434
3 9:0.841236275326
3 10:0.882090289916
4 5:0.699761110077
4 6:0.705363812979
4 7:0.792943853136
4 8:0.736147544948
4 9:0.76905112885
4 10:0.805142145204
5 6:0.0150549447913
5 7:0.281231775666
5 8:0.196423395945
5 9:0.259581900544
5 10:0.290798300648
6 7:0.28610167369
6 8:0.203257029632
6 9:0.258440550674
6 10:0.289825655838
7 8:0.125308167139
7 9:0.360475934731
7 10:0.304630991276
8 9:0.263916631151
8 10:0.239611113878
9 10:0.111050761304
</hsp>