sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1H-A503-A517
X
>3R8T-B27-B56
X
>3F1F-A503-A517
X
>2ZUE-B22-B13
X
>3U5D-1374-1388
X
>2TRA-A20-A13
X
>3U5H-5374-5388
X
>3KNI-A496-A510
X
>3KNI-A2274-A654
X
>2RE8-B18-B12
X
>1ZJW-B18-B12
X
>1QTQ-B18-B12
X
</seq>
<hsp>
0 1:0.711056402637
0 2:0.018558460818
0 3:0.47040667017
0 4:0.356890217902
0 5:0.307448479563
0 6:0.348219070472
0 7:0.461970926589
0 8:0.338285809958
0 9:0.735131761168
0 10:0.611292594598
0 11:0.620590634449
1 2:0.705612370227
1 3:0.807022280132
1 4:0.647571260131
1 5:0.807968566161
1 6:0.61388423086
1 7:0.880549018183
1 8:0.746667204473
1 9:1.0
1 10:0.815705508236
1 11:0.839182878894
2 3:0.473523872361
2 4:0.358130315361
2 5:0.310092692668
2 6:0.350415335151
2 7:0.461480421186
2 8:0.337322206428
2 9:0.737947120755
2 10:0.613241624612
2 11:0.62224032562
3 4:0.215033063108
3 5:0.31043751381
3 6:0.280102077566
3 7:0.408420513414
3 8:0.386256788212
3 9:0.507426158877
3 10:0.382813369598
3 11:0.353068071233
4 5:0.232007579625
4 6:0.127283273568
4 7:0.446499127955
4 8:0.382811926264
4 9:0.626450599796
4 10:0.47065801643
4 11:0.465069803091
5 6:0.29568136883
5 7:0.449098750189
5 8:0.420207168635
5 9:0.724502684132
5 10:0.608612700227
5 11:0.595368352425
6 7:0.487609013737
6 8:0.414943352688
6 9:0.606177250895
6 10:0.45045878268
6 11:0.46620569359
7 8:0.229707978302
7 9:0.49564440566
7 10:0.431346125445
7 11:0.403861376939
8 9:0.533907725674
8 10:0.409778012762
8 11:0.391364394782
9 10:0.202763870039
9 11:0.224585084325
10 11:0.0896634818109
</hsp>