sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J01-A2709-A2754
X
>2J03-A2709-A2754
X
>3R8T-A2464-A2467
X
>3OH5-A2302-A2305
X
>3OH7-A2302-A2305
X
>3F1H-A2456-A2459
X
>3F1F-A2456-A2459
X
</seq>
<hsp>
0 1:0.0277841130751
0 2:1.0
0 3:0.65378832887
0 4:0.678163730231
0 5:0.935647211869
0 6:0.940439878271
1 2:0.994733918875
1 3:0.655084447256
1 4:0.677870652061
1 5:0.933835800574
1 6:0.938648000389
2 3:0.649156026507
2 4:0.663156347337
2 5:0.493985353916
2 6:0.504655585487
3 4:0.0592258868655
3 5:0.521720621641
3 6:0.512930972724
4 5:0.524978509879
4 6:0.514308483123
5 6:0.0266730191285
</hsp>