sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2QWY-B16-B12
X
>3NVI-E15-E5
X
>3NMU-E25-E15
X
>3NVI-F15-F5
X
>3NMU-D25-D15
X
>1FFY-T46-T21
X
>3F1G-Z46-Z21
X
>3AMT-B47-B22
X
>1QU3-T46-T21
X
>3F1E-Y46-Y21
X
>3F1G-Y46-Y21
X
</seq>
<hsp>
0 1:0.337565527326
0 2:0.536780738812
0 3:0.450481944961
0 4:0.503874504174
0 5:0.743840867136
0 6:1.0
0 7:0.878909156459
0 8:0.824837895223
0 9:0.991732894776
0 10:0.989007664884
1 2:0.450286075742
1 3:0.182818107269
1 4:0.315603746626
1 5:0.562592634327
1 6:0.85162962838
1 7:0.740618082661
1 8:0.605877771351
1 9:0.771256434071
1 10:0.768813873694
2 3:0.430940583139
2 4:0.238934983187
2 5:0.567757261108
2 6:0.613234259408
2 7:0.539316516825
2 8:0.598659939563
2 9:0.62910304184
2 10:0.624784603664
3 4:0.290772372188
3 5:0.437227587215
3 6:0.721997086644
3 7:0.616628695907
3 8:0.454570529235
3 9:0.632936236221
3 10:0.629929132695
4 5:0.555342453332
4 6:0.672658854502
4 7:0.572326930516
4 8:0.549143719912
4 9:0.614308735425
4 10:0.606068488096
5 6:0.442117371037
5 7:0.370208975916
5 8:0.190489674675
5 9:0.396099239272
5 10:0.404829868115
6 7:0.166228243058
6 8:0.393340806115
6 9:0.246126903826
6 10:0.248005573174
7 8:0.341013351823
7 9:0.272119435076
7 10:0.26825791992
8 9:0.274160846949
8 10:0.278829470475
9 10:0.0238924226978
</hsp>