sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3RKF-D57-D9
X
>3RKF-C57-C9
X
>3IVN-A58-A10
X
>1Y26-X59-X11
X
>1Y27-X58-X10
X
>3GOG-A56-A8
X
>3FO4-A55-A7
X
>2EEU-A57-A9
X
>2B57-A56-A8
X
>3GER-A57-A9
X
>3DS7-A57-A9
X
</seq>
<hsp>
0 1:0.842525228703
0 2:0.961865593659
0 3:0.728844649406
0 4:0.630559381194
0 5:0.937078027901
0 6:0.532242481623
0 7:0.635108419556
0 8:0.758705959842
0 9:0.704652309932
0 10:0.698618834255
1 2:0.491621837662
1 3:0.322697866065
1 4:0.396184450709
1 5:0.678266467519
1 6:0.61238328277
1 7:0.444445804388
1 8:0.529414018763
1 9:0.554815101477
1 10:0.439967960173
2 3:0.452678371252
2 4:0.514156892299
2 5:0.999999163065
2 6:0.640270621204
2 7:0.472225485647
2 8:0.833738422221
2 9:0.806571789241
2 10:0.709669846303
3 4:0.251672041785
3 5:0.622517999941
3 6:0.473182074527
3 7:0.365137555521
3 8:0.444321425072
3 9:0.438394331118
3 10:0.400529296338
4 5:0.574312180314
4 6:0.348989427541
4 7:0.311823403999
4 8:0.430737455036
4 9:0.338321107124
4 10:0.343291434389
5 6:0.733221367062
5 7:0.749750389439
5 8:0.304449879893
5 9:0.28250882168
5 10:0.459723761384
6 7:0.229120060275
6 8:0.537763571784
6 9:0.462930157367
6 10:0.404847501284
7 8:0.531127365934
7 9:0.507276070678
7 10:0.35556055695
8 9:0.210940027576
8 10:0.252856166815
9 10:0.295047231173
</hsp>