sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OHK-A221-A222
X
>3KNK-A221-A222
X
>3OHZ-A221-A222
X
>3R8S-A1807-A1808
X
>3OHZ-A1739-A1740
X
>3OI1-A1739-A1740
X
>3F2T-X94-X95
X
>3KNK-A1738-A1739
X
>2YIE-Z41-Z42
X
>3F2Q-X94-X95
X
>2CKY-A47-A48
X
</seq>
<hsp>
0 1:0.516033026346
0 2:0.161920079121
0 3:0.248494275945
0 4:0.57703519569
0 5:0.552553815452
0 6:0.49173557774
0 7:0.696902940225
0 8:0.548253064233
0 9:0.469641004872
0 10:0.794762244873
1 2:0.511506188918
1 3:0.496148597068
1 4:0.907741502254
1 5:0.869894116059
1 6:0.81723542234
1 7:0.803899043368
1 8:0.688566818705
1 9:0.685147762787
1 10:0.99999846338
2 3:0.167138020272
2 4:0.516818957083
2 5:0.485367433431
2 6:0.483994355683
2 7:0.651659956411
2 8:0.469764964199
2 9:0.426101322646
2 10:0.736938604234
3 4:0.500406521614
3 5:0.463479916555
3 6:0.413869581467
3 7:0.550485423142
3 8:0.377585098282
3 9:0.326337999759
3 10:0.641106372956
4 5:0.0530680144383
4 6:0.370976507051
4 7:0.439007697023
4 8:0.574739466772
4 9:0.490439324877
4 10:0.485722253553
5 6:0.353001514165
5 7:0.416015207978
5 8:0.533273907529
5 9:0.453409198574
5 10:0.466806377288
6 7:0.411627897469
6 8:0.38064322233
6 9:0.230898989734
6 10:0.357084223518
7 8:0.508494195241
7 9:0.431917460302
7 10:0.365810084348
8 9:0.167600517317
8 10:0.426094104348
9 10:0.380443347582
</hsp>