sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCR-02665-02752
X
>1FFK-02617-02704
X
>3G78-A32-A243
X
>1VQ9-02665-02752
X
>1VQ8-02665-02752
X
>1VQP-02665-02752
X
>1VQK-02665-02752
X
>1VQM-02665-02752
X
>1VQL-02665-02752
X
</seq>
<hsp>
0 1:0.723053583812
0 2:0.999998759187
0 3:0.904539663192
0 4:0.858087316827
0 5:0.740841201113
0 6:0.773126313832
0 7:0.651360225122
0 8:0.652589221983
1 2:0.432880245543
1 3:0.438516710588
1 4:0.428697299167
1 5:0.405657825309
1 6:0.329467199115
1 7:0.412503634221
1 8:0.378012268923
2 3:0.383376840392
2 4:0.445063043466
2 5:0.558373877176
2 6:0.436941757027
2 7:0.56031776917
2 8:0.533119244781
3 4:0.0959029662599
3 5:0.26106119351
3 6:0.1892878786
3 7:0.296552661419
3 8:0.281486865443
4 5:0.196906443241
4 6:0.132324757326
4 7:0.229459177134
4 8:0.228435488629
5 6:0.174709829625
5 7:0.133911925189
5 8:0.114955569814
6 7:0.18249792068
6 8:0.184381421548
7 8:0.0721186465162
</hsp>