sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2ZJR-X544-X545
X
>3U5D-1294-1293
X
>3DIZ-A10-A9
X
>3DIQ-A10-A9
X
>3D0U-A7-A6
X
>3DIG-X10-X9
X
>3DJ2-A10-A9
X
>3DIX-A10-A9
X
>3DIO-X10-X9
X
</seq>
<hsp>
0 1:0.931352067719
0 2:0.870611471904
0 3:0.976087956328
0 4:0.890125784863
0 5:0.983114882972
0 6:0.999998795477
0 7:0.916760629058
0 8:0.961325756129
1 2:0.56064998395
1 3:0.623679477431
1 4:0.554185244915
1 5:0.578110365416
1 6:0.626527254272
1 7:0.580278423031
1 8:0.600154978585
2 3:0.173257856425
2 4:0.202254623272
2 5:0.278368408224
2 6:0.201886592767
2 7:0.120508514398
2 8:0.213347310639
3 4:0.181409323487
3 5:0.205080222905
3 6:0.096385348425
3 7:0.167004092584
3 8:0.181780658136
4 5:0.112965853995
4 6:0.150831039986
4 7:0.148982712128
4 8:0.131728783644
5 6:0.147100042101
5 7:0.203320510264
5 8:0.141089717703
6 7:0.136140848213
6 8:0.111699372727
7 8:0.104416295127
</hsp>