sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2ZJR-Y24-Y56
X
>3F1F-B23-B55
X
>3F1H-B23-B55
X
>3OHZ-B23-B55
X
>3OI1-B23-B55
X
>3OHJ-B23-B55
X
>3OHK-B23-B55
X
>3R8S-B23-B55
X
>3OH5-B23-B55
X
>3OH7-B23-B55
X
>2J03-B23-B55
X
>2J01-B23-B55
X
</seq>
<hsp>
0 1:0.682605236991
0 2:0.673518474557
0 3:0.881733962789
0 4:0.891412456187
0 5:0.959382390503
0 6:0.949841223161
0 7:0.938995932816
0 8:0.916992673485
0 9:0.918470127927
0 10:0.8237275468
0 11:0.823471674783
1 2:0.0336018396082
1 3:0.757639177126
1 4:0.77633630233
1 5:0.852471657703
1 6:0.865670238835
1 7:0.999539098002
1 8:0.794455642593
1 9:0.818608774459
1 10:0.79572633015
1 11:0.794954248912
2 3:0.760001668581
2 4:0.779239547007
2 5:0.850478251011
2 6:0.863445580801
2 7:1.0
2 8:0.794414370706
2 9:0.8186174709
2 10:0.794767613408
2 11:0.793617474935
3 4:0.0346703539572
3 5:0.23376904603
3 6:0.244059369657
3 7:0.572413215817
3 8:0.406077918896
3 9:0.415429342911
3 10:0.511437558114
3 11:0.514426977092
4 5:0.232845143204
4 6:0.239644966339
4 7:0.561333105893
4 8:0.404429987682
4 9:0.410962180535
4 10:0.510379838283
4 11:0.514114800794
5 6:0.0385658988457
5 7:0.454844239416
5 8:0.290252271905
5 9:0.296008897305
5 10:0.439743291382
5 11:0.438058766441
6 7:0.4312382815
6 8:0.285641816986
6 9:0.286431487024
6 10:0.428390562162
6 11:0.427284151601
7 8:0.311284427961
7 9:0.281401024764
7 10:0.295914928933
7 11:0.302470753449
8 9:0.0414931166113
8 10:0.196438054897
8 11:0.196761495911
9 10:0.190189776388
9 11:0.19248685219
10 11:0.0295940534493
</hsp>