sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8T-A2647-A2656
X
>3CCJ-02531-02540
X
>3CCV-02531-02540
X
>3CCS-02531-02540
X
>3CCU-02531-02540
X
>3CD6-02531-02540
X
>1VQ9-02531-02540
X
>1VQP-02531-02540
X
>1VQL-02531-02540
X
>1VQN-02531-02540
X
>1VQ8-02531-02540
X
</seq>
<hsp>
0 1:0.999991417148
0 2:0.91137529651
0 3:0.977719888598
0 4:0.878858513622
0 5:0.931592444424
0 6:0.95648850155
0 7:0.900564809426
0 8:0.882193575714
0 9:0.954407157082
0 10:0.923750433077
1 2:0.426935674047
1 3:0.312607099419
1 4:0.406633946475
1 5:0.388586434543
1 6:0.571166135268
1 7:0.606244837732
1 8:0.691894877749
1 9:0.572225900374
1 10:0.506030640914
2 3:0.189635951987
2 4:0.0926893106142
2 5:0.152578393712
2 6:0.329685311376
2 7:0.351816468978
2 8:0.452370111942
2 9:0.340536289831
2 10:0.421923011654
3 4:0.184066090105
3 5:0.132274267448
3 6:0.380829208838
3 7:0.421353029746
3 8:0.517208229842
3 9:0.38801065807
3 10:0.429625342914
4 5:0.113365156012
4 6:0.308971640488
4 7:0.334756430229
4 8:0.429093877627
4 9:0.335919777355
4 10:0.379785284759
5 6:0.368405250162
5 7:0.400688495256
5 8:0.489808804482
5 9:0.393345674817
5 10:0.438531144555
6 7:0.0982240516217
6 8:0.190062658067
6 9:0.0879803541804
6 10:0.202630217916
7 8:0.112492906329
7 9:0.0948623201928
7 10:0.238201416319
8 9:0.184083752198
8 10:0.2847996055
9 10:0.229962507723
</hsp>