sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8N-A1298-A1332
X
>2UUB-A1276-A1310
X
>2VQE-A1276-A1310
X
>1XMQ-A1271-A1305
X
>1N32-A1276-A1310
X
>2UUA-A1276-A1310
X
>2UXC-A1276-A1310
X
>2VQF-A1276-A1310
X
>1FJG-A1276-A1310
X
</seq>
<hsp>
0 1:0.999993510291
0 2:0.697884407251
0 3:0.725628225475
0 4:0.815920563024
0 5:0.842926881727
0 6:0.690829430073
0 7:0.658487319976
0 8:0.719322693378
1 2:0.461381186591
1 3:0.373352327168
1 4:0.377627967126
1 5:0.347523727963
1 6:0.533754385548
1 7:0.489831716763
1 8:0.533881488154
2 3:0.299458115042
2 4:0.303608249787
2 5:0.270990109797
2 6:0.310826915668
2 7:0.158018170971
2 8:0.241633969242
3 4:0.198771873139
3 5:0.242497591952
3 6:0.233741959313
3 7:0.236088176213
3 8:0.257450059933
4 5:0.127460543818
4 6:0.237352563674
4 7:0.235226615118
4 8:0.318138130896
5 6:0.242610208049
5 7:0.223778155122
5 8:0.307935668476
6 7:0.171276755303
6 8:0.214167721906
7 8:0.191249984951
</hsp>