sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5H-5467-5468
X
>3U5F-61101-61102
X
>3U5B-21089-21090
X
>1DUQ-D6-D7
X
>1DUQ-H6-H7
X
>1DUQ-F6-F7
X
>1DUQ-B6-B7
X
>1CSL-B6-B7
X
</seq>
<hsp>
0 1:0.594065058605
0 2:0.799450432851
0 3:0.97305079018
0 4:0.999986970319
0 5:0.783008557787
0 6:0.764164757915
0 7:0.635308988392
1 2:0.368229542621
1 3:0.594450940034
1 4:0.650291315056
1 5:0.415043512029
1 6:0.399567582153
1 7:0.394333914537
2 3:0.445875469992
2 4:0.48547239911
2 5:0.438857922245
2 6:0.421013533795
2 7:0.390553484215
3 4:0.188730041003
3 5:0.324330596208
3 6:0.346978385329
3 7:0.385029123608
4 5:0.425838000935
4 6:0.456627643046
4 7:0.405538951716
5 6:0.0593915612079
5 7:0.260896864834
6 7:0.264774843386
</hsp>