sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8O-A408-A427
X
>3KNH-A391-A410
X
>2UUA-A400-A419
X
>2VQE-A400-A419
X
>1FJG-A400-A419
X
>3OHY-A400-A419
X
>1N32-A400-A419
X
>3OHC-A400-A419
X
>3OHD-A400-A419
X
>3OGE-A400-A419
X
</seq>
<hsp>
0 1:0.999998056963
0 2:0.793896697285
0 3:0.435938917663
0 4:0.734675706163
0 5:0.683186516686
0 6:0.674515986333
0 7:0.749302531203
0 8:0.749655744488
0 9:0.821344292142
1 2:0.61447238048
1 3:0.594373457096
1 4:0.391590635699
1 5:0.567886953519
1 6:0.510366426718
1 7:0.52285079998
1 8:0.513247721333
1 9:0.59801335581
2 3:0.524295379358
2 4:0.471676649558
2 5:0.626558338599
2 6:0.464956031948
2 7:0.575414029911
2 8:0.56654660091
2 9:0.590400847432
3 4:0.377394723619
3 5:0.367036734906
3 6:0.320587525488
3 7:0.432617907105
3 8:0.426701972406
3 9:0.532599949011
4 5:0.333189524824
4 6:0.252232760549
4 7:0.310096351298
4 8:0.299034233388
4 9:0.350844368073
5 6:0.356736367928
5 7:0.191401840455
5 8:0.188203886325
5 9:0.331380309313
6 7:0.346769868034
6 8:0.333711224088
6 9:0.321986775365
7 8:0.0206329508373
7 9:0.212180445988
8 9:0.207461272521
</hsp>