sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OHD-A573-A619
X
>3OHC-A573-A619
X
>2UUA-A573-A619
X
>2VQE-A573-A619
X
>2VQF-A573-A619
X
>2UUB-A573-A619
X
>1XMQ-A573-A619
X
>2ZJR-X196-X361
X
>1FJG-A573-A619
X
>3KNK-A2669-A2645
X
</seq>
<hsp>
0 1:0.0258480901914
0 2:0.178694688023
0 3:0.158668732863
0 4:0.169521036531
0 5:0.267724273411
0 6:0.201498330289
0 7:0.517632094769
0 8:0.395332750385
0 9:0.994314195
1 2:0.18328500361
1 3:0.167208603935
1 4:0.172513567695
1 5:0.269291082127
1 6:0.20284847293
1 7:0.514084319022
1 8:0.404204560703
1 9:0.99999858422
2 3:0.0863097246678
2 4:0.148452646247
2 5:0.121988161183
2 6:0.10502250993
2 7:0.553404784747
2 8:0.267920695924
2 9:0.976003198384
3 4:0.112793520115
3 5:0.159297559206
3 6:0.106543044309
3 7:0.552226927909
3 8:0.282656877577
3 9:0.933008582841
4 5:0.239196757357
4 6:0.127024733002
4 7:0.561695675452
4 8:0.340145267509
4 9:0.889684292383
5 6:0.14613214114
5 7:0.549655086252
5 8:0.22662150074
5 9:0.991576916232
6 7:0.496676750513
6 8:0.251430347097
6 9:0.903173884949
7 8:0.513349367622
7 9:0.927096198683
8 9:0.877008705282
</hsp>