sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNI-B43-B33
X
>3CCE-01979-01699
X
>1Q81-A1979-A1699
X
>1K9M-A1979-A1699
X
>1YJ9-01979-01699
X
>1YJW-01979-01699
X
>1YIT-01979-01699
X
>2OTL-01979-01699
X
>1VQ6-01979-01699
X
</seq>
<hsp>
0 1:1.0
0 2:0.929259352273
0 3:0.890596935186
0 4:0.922188721442
0 5:0.914151579751
0 6:0.954551788985
0 7:0.91566618979
0 8:0.968629473677
1 2:0.177140335411
1 3:0.167185283704
1 4:0.15659176422
1 5:0.144775802709
1 6:0.0862411442429
1 7:0.153847670131
1 8:0.140176478046
2 3:0.128710659747
2 4:0.176536291805
2 5:0.151116846404
2 6:0.150534394988
2 7:0.211260516203
2 8:0.208767777563
3 4:0.08617291353
3 5:0.0851959395058
3 6:0.10156053233
3 7:0.122462436896
3 8:0.132923384578
4 5:0.071085611065
4 6:0.0880457763626
4 7:0.102472769503
4 8:0.095392385617
5 6:0.0667060308361
5 7:0.0920376774911
5 8:0.105749121953
6 7:0.088952362683
6 8:0.0791065584159
7 8:0.0704991023112
</hsp>