sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J03-A1608-A1907
X
>3CCM-01703-01978
X
>3F1H-A1686-A1985
X
>3R8T-A1660-A1983
X
>3F1F-A1686-A1985
X
>1FFK-01656-01931
X
>3OI1-A1608-A1907
X
>3OHZ-A1608-A1907
X
>3OH7-A1608-A1907
X
</seq>
<hsp>
0 1:0.688414468474
0 2:0.511329240606
0 3:0.999984291467
0 4:0.479454457303
0 5:0.723404279526
0 6:0.74923324454
0 7:0.737715274074
0 8:0.754831561474
1 2:0.416500507538
1 3:0.622461164686
1 4:0.42315211629
1 5:0.240473049135
1 6:0.564676769387
1 7:0.587725018174
1 8:0.554238543223
2 3:0.782001004616
2 4:0.0733042939868
2 5:0.579167430163
2 6:0.393032144127
2 7:0.387477384265
2 8:0.431724466559
3 4:0.787256091598
3 5:0.649894558352
3 6:0.642370105899
3 7:0.702441074991
3 8:0.611597936111
4 5:0.566538198165
4 6:0.389350479571
4 7:0.375188613423
4 8:0.416775763042
5 6:0.70048529651
5 7:0.709830103442
5 8:0.653181648002
6 7:0.102568543066
6 8:0.204426911481
7 8:0.186109758956
</hsp>