sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8T-A2216-A2189
X
>3OHJ-A2054-A2037
X
>3OHK-A2054-A2037
X
>3U5D-12344-12265
X
>2P7E-C6-D10
X
>2BCZ-C6-D10
X
</seq>
<hsp>
0 1:0.963597963177
0 2:0.929865336199
0 3:0.880874499156
0 4:0.999998828581
0 5:0.862658922892
1 2:0.0722996919532
1 3:0.442650017882
1 4:0.45019086235
1 5:0.421072809411
2 3:0.407315964481
2 4:0.423074865228
2 5:0.377360846199
3 4:0.408943079701
3 5:0.307662757822
4 5:0.195739197237
</hsp>