sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2ZZM-B53-B50
X
>3R8O-A290-A303
X
>3R8T-A2352-A2349
X
>2J00-A282-A295
X
>2J02-A282-A295
X
>2ZJR-Y90-Y87
X
</seq>
<hsp>
0 1:0.498730906051
0 2:0.600512168228
0 3:0.518882176664
0 4:0.529058182511
0 5:0.86859389816
1 2:0.716844578243
1 3:0.338542673386
1 4:0.346555140327
1 5:0.602890133936
2 3:0.657897395114
2 4:0.667920567276
2 5:0.999995266519
3 4:0.0178019307424
3 5:0.565624833564
4 5:0.561722886159
</hsp>