sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2CT8-C22-C46
X
>3KNK-A782-A691
X
>3CCJ-0855-0762
X
>2ZJR-X709-X618
X
>1IVS-C20-C44
X
>1GAX-C20-C44
X
</seq>
<hsp>
0 1:0.999999301517
0 2:0.974944997746
0 3:0.996616629109
0 4:0.647437589887
0 5:0.649732779849
1 2:0.260888189701
1 3:0.244223437889
1 4:0.570044408403
1 5:0.541099068417
2 3:0.155240483283
2 4:0.484682554875
2 5:0.448466150501
3 4:0.460532088282
3 5:0.43343109113
4 5:0.0559840122463
</hsp>