sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNI-A176-A179
X
>3OI1-A176-A179
X
>3CCJ-0153-0156
X
>3U5D-136-139
X
>3OHZ-A176-A179
X
>3OHJ-A176-A179
X
>3OHK-A176-A179
X
>2J03-A176-A179
X
>2J01-A176-A179
X
</seq>
<hsp>
0 1:0.495444261205
0 2:1.0
0 3:0.62186631749
0 4:0.506806980871
0 5:0.614322048879
0 6:0.64937394342
0 7:0.449304171307
0 8:0.461818058913
1 2:0.81960527797
1 3:0.351555281368
1 4:0.108111505101
1 5:0.337621833155
1 6:0.346157416181
1 7:0.295072759688
1 8:0.30392138993
2 3:0.749333393902
2 4:0.804861282918
2 5:0.773330415669
2 6:0.719857724266
2 7:0.723033066695
2 8:0.711669842449
3 4:0.364092174567
3 5:0.492501380229
3 6:0.465830621476
3 7:0.328117242508
3 8:0.363769118844
4 5:0.247974313196
4 6:0.284553483747
4 7:0.298911314069
4 8:0.297001883423
5 6:0.166947584051
5 7:0.444678421856
5 8:0.421608308663
6 7:0.421914643151
6 8:0.391329633
7 8:0.077307428451
</hsp>