sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCJ-0182-0415
X
>2A43-A18-A13
X
>3CPW-0182-0415
X
>3CMA-0182-0415
X
>1VQO-0182-0415
X
>1YHQ-0182-0415
X
>1VQN-0182-0415
X
>1VQK-0182-0415
X
</seq>
<hsp>
0 1:0.999996242231
0 2:0.649231374456
0 3:0.46906885697
0 4:0.678967341917
0 5:0.651728547354
0 6:0.613676931359
0 7:0.576856296577
1 2:0.668979277355
1 3:0.749112986688
1 4:0.790348099384
1 5:0.775459938342
1 6:0.781685228665
1 7:0.767524542037
2 3:0.228932435579
2 4:0.145125482708
2 5:0.118628888507
2 6:0.138511253554
2 7:0.133306707785
3 4:0.266901438869
3 5:0.240061703127
3 6:0.224786834252
3 7:0.202800720922
4 5:0.0860186675767
4 6:0.0949102701147
4 7:0.135802164071
5 6:0.0807181197152
5 7:0.0925060586538
6 7:0.0608121530656
</hsp>