sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8T-A605-A621
X
>3R8N-A407-A431
X
>3SUH-X92-X41
X
>1YJ9-981-999
X
>3CCS-02703-02731
X
>3OGE-A718-A644
X
>1FFK-981-999
X
>3CC2-981-999
X
>2ZJR-X2474-X2510
X
>1M90-B81-B99
X
>3OH7-A834-A839
X
>3R8O-A903-A892
X
</seq>
<hsp>
0 1:0.974489952415
0 2:0.759900884608
0 3:0.790256399789
0 4:0.454986133941
0 5:0.342603805518
0 6:0.644427345018
0 7:0.72475050521
0 8:0.729098184542
0 9:0.773105153274
0 10:0.645916463775
0 11:0.577039622876
1 2:0.609745106952
1 3:0.845246940813
1 4:0.936569017839
1 5:0.970899355014
1 6:0.762656252579
1 7:0.760863216947
1 8:1.0
1 9:0.796593726841
1 10:0.899570280179
1 11:0.985996098931
2 3:0.491017266754
2 4:0.480125200911
2 5:0.727042874322
2 6:0.335259564173
2 7:0.39990880903
2 8:0.502294019824
2 9:0.459021174922
2 10:0.437428346377
2 11:0.535145144835
3 4:0.567822862145
3 5:0.921465833047
3 6:0.315326632441
3 7:0.172765492928
3 8:0.78028500169
3 9:0.196924929838
3 10:0.405783539356
3 11:0.50256494238
4 5:0.42735187961
4 6:0.409345448983
4 7:0.515801622811
4 8:0.36770313755
4 9:0.575484177018
4 10:0.390959467302
4 11:0.380697034089
5 6:0.717606929348
5 7:0.836812841015
5 8:0.553152803893
5 9:0.893754305304
5 10:0.706720466407
5 11:0.659141765134
6 7:0.170260589495
6 8:0.591000356114
6 9:0.213919172292
6 10:0.201488092663
6 11:0.289730387992
7 8:0.71242316138
7 9:0.0840615468401
7 10:0.293041664946
7 11:0.400175067632
8 9:0.760943062157
8 10:0.542352057155
8 11:0.561491114248
9 10:0.310269284942
9 11:0.412260301892
10 11:0.204652582081
</hsp>