sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CXC-01742-01718
X
>2J01-A250-A385
X
>3OHC-A189-A178
X
>3U5H-53134-53078
X
>1VQ5-02727-02708
X
>3F1F-A2631-A2657
X
>3CD6-01498-01604
X
>3OH7-A564-A551
X
>3CCR-02493-02039
X
>1Q86-A1498-A1604
X
>1YI2-01498-01604
X
</seq>
<hsp>
0 1:0.416089655287
0 2:1.0
0 3:0.582567872868
0 4:0.425924548446
0 5:0.572543835419
0 6:0.835724152774
0 7:0.628338351938
0 8:0.793130296735
0 9:0.823991347223
0 10:0.841619959933
1 2:0.955009763738
1 3:0.433411103738
1 4:0.283356635441
1 5:0.543957401543
1 6:0.6846805926
1 7:0.486997518756
1 8:0.608550467747
1 9:0.662559255007
1 10:0.664031170625
2 3:0.644760139822
2 4:0.734433057415
2 5:0.484759198972
2 6:0.539929032212
2 7:0.764984830218
2 8:0.440034668445
2 9:0.513356122754
2 10:0.572768435663
3 4:0.317280463086
3 5:0.373707866777
3 6:0.455898727131
3 7:0.441061705019
3 8:0.376162086693
3 9:0.453742067435
3 10:0.47725577862
4 5:0.290407323646
4 6:0.455188714931
4 7:0.277336878897
4 8:0.422751363386
4 9:0.44212688071
4 10:0.450740010601
5 6:0.384161141742
5 7:0.370387376136
5 8:0.33022068293
5 9:0.365867920177
5 10:0.400594714792
6 7:0.337711430344
6 8:0.308686085333
6 9:0.142945128369
6 10:0.163298298733
7 8:0.469326052851
7 9:0.375470968031
7 10:0.352980792713
8 9:0.219862087215
8 10:0.259285852582
9 10:0.0820566508163
</hsp>