sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8N-A1349-A1369
X
>2VQF-A1317-A914
X
>2DR7-B25-B5
X
>3R8T-A2506-A2562
X
>1VBX-B37-B1
X
>3CD6-0859-0865
X
>3CC4-0859-0865
X
>3F1G-A1327-A1348
X
</seq>
<hsp>
0 1:0.446884021583
0 2:0.774789431152
0 3:0.416002147309
0 4:0.573850262395
0 5:0.334553362782
0 6:0.262357146284
0 7:0.606979119409
1 2:0.802160532268
1 3:0.579020670973
1 4:0.894507623731
1 5:0.533033766995
1 6:0.465723952799
1 7:0.793473657725
2 3:0.600008652065
2 4:1.0
2 5:0.914669699655
2 6:0.781035516291
2 7:0.609838349717
3 4:0.864449095717
3 5:0.408423644908
3 6:0.328003963169
3 7:0.345463608864
4 5:0.772212134464
4 6:0.71673870221
4 7:0.914351264742
5 6:0.142529215531
5 7:0.562826928063
6 7:0.494507470916
</hsp>