sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CMA-0442-01321
X
>3U5D-12310-11593
X
>1VQP-0442-01321
X
>3CCM-0442-01321
X
>3U5H-5340-51389
X
>3CC7-0442-01321
X
>1VQN-0442-01321
X
>2QEX-0442-01321
X
>1VQ4-0442-01321
X
</seq>
<hsp>
0 1:0.936955917162
0 2:0.230413081603
0 3:0.188016342813
0 4:0.209028618266
0 5:0.257875784745
0 6:0.286629179195
0 7:0.295791059426
0 8:0.38488288846
1 2:0.899864756957
1 3:0.954388895673
1 4:0.936560388814
1 5:0.973084731214
1 6:0.970601443244
1 7:1.0
1 8:0.992340015198
2 3:0.168325693154
2 4:0.197100939403
2 5:0.175610119977
2 6:0.134322969164
2 7:0.195373519581
2 8:0.253696431611
3 4:0.0804617024169
3 5:0.0877424383663
3 6:0.132976893848
3 7:0.126531817087
3 8:0.208868986793
4 5:0.115029456166
4 6:0.163792942777
4 7:0.156733331385
4 8:0.221002239212
5 6:0.0914320266066
5 7:0.0628901969297
5 8:0.136525475258
6 7:0.0964262901997
6 8:0.134181409397
7 8:0.127153204602
</hsp>