sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8S-A1266-A1995
X
>3R8T-A1266-A1994
X
>3OGE-A1125-A1104
X
>3OGY-A1125-A1104
X
>3OHY-A1125-A1104
X
>3OI0-A1125-A1104
X
>3OHD-A1125-A1104
X
>3OHC-A1125-A1104
X
>3KNH-A1116-A1095
X
</seq>
<hsp>
0 1:0.258367054006
0 2:0.834880764631
0 3:0.833888547277
0 4:0.732618463178
0 5:0.731322688166
0 6:0.805702633552
0 7:0.8101900333
0 8:0.681478922584
1 2:0.999997401269
1 3:0.998368872097
1 4:0.889089550771
1 5:0.887542712934
1 6:0.970751401526
1 7:0.976405644078
1 8:0.848123495494
2 3:0.00939669297218
2 4:0.185473534678
2 5:0.185371605292
2 6:0.106847487163
2 7:0.110543198267
2 8:0.310354599007
3 4:0.187602622663
3 5:0.187289208005
3 6:0.109419327577
3 7:0.113673590143
3 8:0.308021239799
4 5:0.00728626641251
4 6:0.119898711136
4 7:0.124150416586
4 8:0.273509159132
5 6:0.118832940891
5 7:0.123358138293
5 8:0.272517280901
6 7:0.0107370367399
6 8:0.28461271405
7 8:0.286926325454
</hsp>