sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8S-A2160-A2112
X
>3R8T-A2159-A2111
X
>3R8N-A35-A545
X
>3CCJ-0422-0224
X
>2ZM5-D7-D20
X
>2ZXU-D7-D20
X
</seq>
<hsp>
0 1:0.313169758091
0 2:1.0
0 3:0.885899357361
0 4:0.621970895229
0 5:0.6200995293
1 2:0.950315755711
1 3:0.85636153934
1 4:0.572371929384
1 5:0.588223727846
2 3:0.227111976338
2 4:0.46714015108
2 5:0.45180706319
3 4:0.344540703438
3 5:0.315695054624
4 5:0.106988174039
</hsp>