ClaRNA

Doublet Group info: classifier/bp/SS_cis/UA

distance statistics     members distance graph (clans)     superimpose     cluster

Details

N. type: None
Program used: None
Category: classifier
SubCategory: bp
Desc: SS_cis/UA
Sub-clusters:
count: 11     show
SS_cis/UA/sub-001
SS_cis/UA/sub-002
SS_cis/UA/sub-003
SS_cis/UA/sub-004
SS_cis/UA/sub-005
SS_cis/UA/sub-006
SS_cis/UA/sub-007
SS_cis/UA/sub-008
SS_cis/UA/sub-009
SS_cis/UA/sub-010
SS_cis/UA/sub-011
Members:
count: 840
download members
3KNK:A512:A494
3CCJ:0813:01668
3U5H:52727:52092
3R8T:A498:A479
3R8O:A366:A354
3CMA:0914:02236
3F1E:A358:A346
2J01:A2482:A1854
2J03:A2482:A1854
2J02:A1291:A1336
2J00:A1291:A1336
3U5D:12726:12088
3OGE:A358:A346
1FJG:A358:A346
2ZJR:X430:X412
2J01:A512:A494
2UXC:A1291:A1336
2VQE:A358:A346
1XMQ:A358:A346
3OHD:A1291:A1336
2VQF:A358:A346
3OHY:A1291:A1336
3OHC:A1291:A1336
3KNH:A1282:A1327
2UUA:A358:A346
1FJG:A1195:A987
2UUA:A1291:A1336
2UUA:A1195:A987
3F1E:A1291:A1336
2UUB:A1291:A1336
3U5B:2439:2427
1N32:A358:A346
2VQF:A1195:A987
2J01:A388:A438
2J03:A388:A438
1N32:A1291:A1336
2VQF:A1291:A1336
3R8N:A366:A354
1LNG:B84:B36
2VQE:A1291:A1336
3F1F:A496:A525
3OHJ:A489:A518
1FJG:A1291:A1336
1YJ9:0469:0499
1U9S:A90:A46
3OHK:A489:A518
3CCQ:02247:0723
3CCR:02024:01037
3R8T:A1398:A1376
2DU3:D7:D45
3OH5:A489:A518
3OHZ:A489:A518
3R8T:A372:A422
3OI1:A489:A518
3CME:0370:0418
1JJ2:0370:0418
1Q86:A370:A418
1VQK:0370:0418
3CC4:01416:01615
3OHJ:A2063:A1778
1K9M:A370:A418
1YI2:0370:0418
1YJN:0370:0418
3CCU:0370:0418
3I56:0370:0418
3KNK:A2138:A1777
2J03:A2110:A1778
3F1F:A1124:A1103
3CC2:0370:0418
1Q82:A2024:A1037
3CCV:0370:0418
1QVG:0370:0418
1VQ4:0370:0418
1M90:A370:A418
1NJI:A370:A418
1VQN:02024:01037
3G6E:0370:0418
1VQO:0370:0418
1K8A:A370:A418
1N8R:A2024:A1037
1VQP:0370:0418
3F1G:A212:A196
3CCL:01416:01615
1NJI:A2024:A1037
3OH5:A2063:A1778
3OH7:A2063:A1778
3CPW:0370:0418
1VQ9:0370:0418
3CPW:02024:01037
3CCM:0370:0418
3CCQ:01416:01615
1VQL:0370:0418
3U5D:12385:1991
3CCS:01416:01615
1KD1:A370:A418
1VQP:02024:01037
3CCJ:0193:0177
1VQL:02024:01037
1YJ9:0370:0418
3CD6:02024:01037
3G6E:01416:01615
2ZJR:X210:X195
3CC4:02247:0723
1N8R:A370:A418
1JJ2:02024:01037
1VQM:0370:0418
1FFK:01977:01036
2QA4:02072:01887
3CCM:02024:01037
1VQO:01416:01615
3CC2:02024:01037
3U5H:52386:5997
3CXC:02247:0723
1MZP:B37:B9
1QA6:D54:D33
1QA6:C54:C33
1VQN:01416:01615
3CCU:01416:01615
3CPW:02247:0723
3MUT:R52:R26
3G71:02073:01888
1Q86:A1416:A1615
1YI2:01416:01615
3CCV:02073:01888
3U5F:6468:6763
3G71:02247:0723
1YJW:02024:01037
3CC7:02024:01037
3CC4:02073:01888
1N8R:A1416:A1615
3CCE:01416:01615
3CCS:0193:0177
1VQ7:02024:01037
3U5D:12235:12039
1YHQ:02024:01037
1VQL:01416:01615
2VQF:A212:A196
1VQ5:02024:01037
3G6E:02024:01037
3CC7:01416:01615
1K9M:A1416:A1615
3CC2:02247:0723
1YJN:01416:01615
1YJ9:02024:01037
3F1H:A1371:A1589
1VQK:01416:01615
1NJI:A1416:A1615
1VQ4:02073:01888
1VQ6:02073:01888
1VQ6:02024:01037
3CCM:01416:01615
2QA4:01512:01588
1VQ7:01416:01615
3U5F:663:6164
1VQP:02073:01888
3CMA:02024:01037
1VQ6:01416:01615
1VQ4:02024:01037
1YIJ:01416:01615
2QA4:02246:0722
3CC2:01416:01615
3OHJ:A1301:A1511
1YI2:02247:0723
1VQM:02247:0723
3CCM:02073:01888
1VQN:02247:0723
1VQL:02073:01888
1Q86:A2247:A723
3CMA:02073:01888
1VQ8:02073:01888
1YJN:02247:0723
3U5H:52239:52043
1YIJ:02024:01037
3U5D:1267:1315
3CCU:0193:0177
2OTJ:01513:01589
1YI2:02073:01888
1YIJ:02247:0723
1YI2:02024:01037
3CXC:01513:01589
3G71:0193:0177
3CXC:02319:0753
3CCM:02247:0723
1Q81:A1416:A1615
3U5B:2471:2751
3CCE:02073:01888
3KNK:A1722:A1726
1Q82:A1416:A1615
3U5B:2115:2332
2OTL:01513:01589
1YJW:02247:0723
3OGY:A1353:A910
3CCE:02247:0723
3CCE:0193:0177
3CXC:02073:01888
1K8A:A2247:A723
3CCJ:017:01277
1K8A:A1416:A1615
3OGE:A1353:A910
3CC7:02073:01888
1VQ6:01513:01589
1U0B:A7:A44
1N32:A212:A196
1YJ9:01416:01615
1Q82:A2247:A723
3CXC:0193:0177
3G6E:0193:0177
1YHQ:02073:01888
1N8R:A2247:A723
3F1G:A1353:A910
3CCR:01223:0553
3CME:02073:01888
2ZJR:X2244:X872
3I56:0193:0177
2ZJR:X1267:X1488
1YIT:0193:0177
1FFK:02286:01015
1FFK:01466:01542
1NJI:A193:A177
1N8R:A193:A177
1N8R:A2319:A753
3CCS:02073:01888
1KD1:A2319:A753
1VQM:02073:01888
1M90:A2319:A753
2OTL:02073:01888
3CCU:02319:0753
1Q82:A193:A177
2J01:A1723:A1727
3CC4:0193:0177
3CC7:0193:0177
1Q86:A2073:A1888
2QEX:01513:01589
1VQO:02319:0753
2UUA:A1353:A910
1VQ5:02319:0753
3CCS:02333:01016
1K8A:A193:A177
1S72:02319:0753
3CPW:02073:01888
1Q86:A193:A177
1VQ5:02073:01888
3CC2:02073:01888
3OHJ:A1723:A1727
1VQ4:0193:0177
1Q81:A2073:A1888
3G71:02319:0753
1VQ8:017:01277
3R8T:A2449:A952
1YIJ:02073:01888
1VQ7:02073:01888
3CC2:02319:0753
3CCQ:02319:0753
1FFK:02272:0752
1YIT:02333:01016
1YIJ:0193:0177
3U5F:6115:6329
3OHK:A1723:A1727
1QVG:02073:01888
1VQ4:01513:01589
1VQ4:02319:0753
1VQL:02319:0753
3CMA:02319:0753
3CCV:02319:0753
3CPW:0193:0177
1NJI:A2319:A753
2QA4:02318:0752
1HC8:C54:C33
1VQN:02319:0753
1VQK:02319:0753
2QEX:02319:0753
3R8O:A541:A507
3CCL:02319:0753
1VQ7:02319:0753
3CME:02333:01016
3U5B:21632:21115
3CME:02319:0753
3CCE:02319:0753
3OI1:A1301:A1511
3R8S:A233:A218
1YJN:0193:0177
3CCJ:02319:0753
1YIT:02319:0753
1VQM:017:01277
1VQ6:0193:0177
1VQP:017:01277
1N8R:A2333:A1016
1K8A:A2073:A1888
2OTJ:02319:0753
2QA4:017:01276
1NJI:A2333:A1016
1K9M:A2073:A1888
1YI2:02333:01016
3I56:02319:0753
1KD1:A2073:A1888
1VQP:02319:0753
3CMA:01223:0553
1YJW:02333:01016
1NJI:A2073:A1888
3CXC:017:01277
1S72:02073:01888
1VQL:017:01277
3CME:017:01277
1K9M:A2333:A1016
1YJ9:017:01277
1VQL:0193:0177
2J01:A2334:A959
1VQ9:017:01277
3F1F:A2441:A977
1VQM:0193:0177
1K9M:A17:A1277
1S72:017:01277
1Q86:A17:A1277
3OXM:A5:B39
1KD1:A17:A1277
3OWI:A5:B39
3I56:01223:0553
3R8T:A233:A218
3OH5:A1723:A1727
1VQ8:01513:01589
1YJN:02333:01016
3CPW:01513:01589
1FFK:02200:0722
1Q82:A17:A1277
1VQM:02333:01016
3OXD:B5:A39
2OTL:017:01277
1YJN:017:01277
1VQ6:017:01277
1VQM:01513:01589
3CCV:017:01277
1QVG:02333:01016
1VQ5:017:01277
3CCL:02333:01016
3CC7:02333:01016
3CCV:01223:0553
1Q81:A1223:A553
1VQ9:02333:01016
1S72:01513:01589
2QA4:02332:01015
2QEX:02333:01016
3U5D:175:160
1L8V:B120:B49
3OXE:A5:B39
3G71:01223:0553
1QVG:01223:0553
1YJ9:01223:0553
1K8A:A17:A1277
3U5H:5325:523
3OHZ:A2287:A959
3OI1:A2287:A959
3CD6:01223:0553
3G6E:01223:0553
1YJW:01223:0553
3CC4:01223:0553
3U5H:575:560
1VQ7:01223:0553
1VQK:01223:0553
1GID:A121:A49
1VQN:01223:0553
1L8V:A120:A49
1Y39:D54:D33
1XMQ:A1347:A910
1VQO:01223:0553
1VQ6:01223:0553
1YIT:01223:0553
3IRW:R52:R26
3CCM:01223:0553
1S72:01223:0553
1KD1:A1223:A553
1K9M:A1223:A553
3MUM:R52:R26
1K8A:A1223:A553
1YHQ:01223:0553
1YI2:01223:0553
3CCL:01223:0553
3CCU:01223:0553
3CCQ:01223:0553
1N8R:A1223:A553
3MUR:R52:R26
1VQ5:01223:0553
1YIJ:01223:0553
1HR2:A120:A49
3U5H:5367:5396
2QEX:0469:0499
3OH5:A512:A494
3OH7:A512:A494
3U5D:1390:1372
1VQN:0469:0499
3OH5:A388:A438
3OHJ:A512:A494
3OHK:A512:A494
3CD6:0469:0499
3U5H:5390:5372
3CCS:0469:0499
3OH7:A388:A438
3CCE:0469:0499
1VQM:0469:0499
1VQ5:0469:0499
1YI2:0469:0499
3CCM:0469:0499
2OTJ:0469:0499
3CCV:0469:0499
1Q86:A469:A499
3CME:0469:0499
3CCU:0469:0499
1VQ4:0469:0499
1VQL:0469:0499
1VQ6:0469:0499
3OHJ:A388:A438
1M90:A469:A499
2ZJR:X407:X436
1JJ2:0469:0499
1K8A:A469:A499
3CPW:0469:0499
3CC2:0469:0499
3I56:0469:0499
3CCJ:02247:0723
1YJW:0469:0499
3OHK:A388:A438
1VQ9:0469:0499
1Q81:A469:A499
1NJI:A469:A499
2J00:A1353:A910
2J02:A1353:A910
3CXC:0469:0499
3R8N:A1313:A1358
2QA4:0469:0499
3U5B:21534:21579
1N8R:A469:A499
1Q82:A469:A499
3KNI:A489:A518
1IL2:C7:C45
1VQO:017:01277
1Q81:A193:A177
3F1H:A2441:A977
2J03:A2334:A959
3OWZ:B5:A39
3R8S:A2450:A952
3CCS:017:01277
1YJ9:02333:01016
1Q82:A2073:A1888
1VQN:017:01277
1YJN:02319:0753
1VQK:0193:0177
1KD1:A2333:A1016
1YJ9:02319:0753
1VQ6:02319:0753
3U5H:52579:51079
1N8R:A2073:A1888
3CPW:02333:01016
1Q81:A2333:A1016
3OWZ:A5:B34
3CCJ:02333:01016
3OWI:B5:A39
2ZZN:D7:D45
3U5D:12578:11073
1VQP:0193:0177
1VQK:02333:01016
1HC8:D54:D33
1VQ8:02319:0753
1YJW:02073:01888
1FFK:017:01230
3CCV:02333:01016
3OXE:B5:A39
1JJ2:02333:01016
3F1F:A1801:A1805
1VQ4:017:01277
1M90:A1513:A1589
1QVG:0193:0177
1M90:A17:A1277
3U5B:21595:21145
3CCR:02333:01016
3CCR:02073:01888
1VQ4:02333:01016
1YHQ:017:01277
3CPW:017:01277
3CC7:017:01277
3OXB:B5:A39
3CCL:017:01277
3OWW:B5:A39
3I56:017:01277
3CC4:017:01277
3OHJ:A2287:A959
1NJI:A1513:A1589
3CCU:02333:01016
1QVG:017:01277
1YIT:017:01277
1VQ7:017:01277
1YIJ:017:01277
3CCQ:017:01277
3CXC:01223:0553
3U5B:263:2167
3F1H:A1801:A1805
1YI2:017:01277
3CME:0193:0177
2QEX:017:01277
1Q82:A1513:A1589
1JJ2:017:01277
1VQL:02333:01016
Closest classifer groups: show all      show selected
Group Members RMSD
bp/SW_tran 9 1.277
base-ribose/H_7BR 174 1.381
special/SH_tran 1 1.605
special/HS_tran 1 1.605
base-ribose/W_6BR 481 1.895
special/HS_cis 1 3.252
special/SH_cis 1 3.252
bp/HW_cis 6 3.975
base-ribose/W_5BR 75 4.287
base-phosphate/H_0BPh 255 5.106

Extra

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Reference image (generated by PyMOL):
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All members (generated by PyMOL):
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