ClaRNA

Doublet Group distance statistics: 727

back

Distances from reference structure (by RMSD)

26, 24, 1, 0, 0, 3, 0, 0, 1, 1, 1, 6, 11, 6, 1, 7, 21, 14, 2, 49,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
N1 B 0, 0.102, 0.393, 0.683, 1.365 max_d=1.365 avg_d=0.393 std_dev=0.291
C1' B 0, 0.262, 0.850, 1.438, 1.913 max_d=1.913 avg_d=0.850 std_dev=0.588
N1 A 0, 0.058, 0.662, 1.267, 2.371 max_d=2.371 avg_d=0.662 std_dev=0.604
C5 A 0, 0.399, 1.098, 1.798, 2.573 max_d=2.573 avg_d=1.098 std_dev=0.699
C4 A 0, 0.489, 1.254, 2.020, 2.164 max_d=2.164 avg_d=1.254 std_dev=0.766
C2 A 0, 0.166, 0.953, 1.741, 2.950 max_d=2.950 avg_d=0.953 std_dev=0.787
C2 B 0, 0.279, 1.079, 1.878, 3.186 max_d=3.186 avg_d=1.079 std_dev=0.800
C2' B 0, 0.327, 1.131, 1.934, 2.440 max_d=2.440 avg_d=1.131 std_dev=0.804
C6 A 0, 0.310, 1.139, 1.968, 2.867 max_d=2.867 avg_d=1.139 std_dev=0.829
C6 B 0, 0.357, 1.219, 2.081, 3.100 max_d=3.100 avg_d=1.219 std_dev=0.862
C1' A 0, 0.357, 1.306, 2.256, 3.741 max_d=3.741 avg_d=1.306 std_dev=0.949
N3 A 0, 0.411, 1.451, 2.490, 3.737 max_d=3.737 avg_d=1.451 std_dev=1.040
N3 B 0, 0.411, 1.467, 2.523, 3.110 max_d=3.110 avg_d=1.467 std_dev=1.056
O4' B 0, 0.497, 1.597, 2.697, 3.122 max_d=3.122 avg_d=1.597 std_dev=1.100
N4 A 0, 0.729, 1.930, 3.130, 3.430 max_d=3.430 avg_d=1.930 std_dev=1.201
C2' A 0, 0.433, 1.641, 2.850, 4.198 max_d=4.198 avg_d=1.641 std_dev=1.208
O2' A 0, 0.642, 1.852, 3.062, 4.494 max_d=4.494 avg_d=1.852 std_dev=1.210
C3' B 0, 0.475, 1.759, 3.042, 3.626 max_d=3.626 avg_d=1.759 std_dev=1.284
O2 A 0, 0.126, 1.421, 2.716, 4.513 max_d=4.513 avg_d=1.421 std_dev=1.295
C4' B 0, 0.592, 1.971, 3.350, 4.275 max_d=4.275 avg_d=1.971 std_dev=1.379
C4 B 0, 0.157, 1.542, 2.927, 4.244 max_d=4.244 avg_d=1.542 std_dev=1.385
C5 B 0, 0.295, 1.706, 3.117, 4.562 max_d=4.562 avg_d=1.706 std_dev=1.411
O2 B 0, 0.439, 1.854, 3.270, 5.130 max_d=5.130 avg_d=1.854 std_dev=1.415
O2' B 0, 0.397, 1.869, 3.342, 4.275 max_d=4.275 avg_d=1.869 std_dev=1.472
O4' A 0, 0.594, 2.244, 3.893, 5.970 max_d=5.970 avg_d=2.244 std_dev=1.649
C5' B 0, 0.707, 2.609, 4.511, 6.194 max_d=6.194 avg_d=2.609 std_dev=1.902
C3' A 0, 0.620, 2.530, 4.440, 6.308 max_d=6.308 avg_d=2.530 std_dev=1.910
O3' B 0, 0.693, 2.626, 4.559, 5.529 max_d=5.529 avg_d=2.626 std_dev=1.933
N4 B 0, 0.259, 2.241, 4.223, 5.748 max_d=5.748 avg_d=2.241 std_dev=1.982
O5' B 0, 0.319, 2.387, 4.454, 6.764 max_d=6.764 avg_d=2.387 std_dev=2.068
C4' A 0, 0.776, 2.889, 5.002, 7.518 max_d=7.518 avg_d=2.889 std_dev=2.113
O3' A 0, 0.703, 3.080, 5.456, 7.981 max_d=7.981 avg_d=3.080 std_dev=2.376
O5' A 0, 0.714, 3.355, 5.995, 10.119 max_d=10.119 avg_d=3.355 std_dev=2.640
P B 0, 0.512, 3.261, 6.010, 8.685 max_d=8.685 avg_d=3.261 std_dev=2.749
OP1 B 0, 1.149, 3.904, 6.660, 9.066 max_d=9.066 avg_d=3.904 std_dev=2.755
C5' A 0, 0.994, 3.818, 6.641, 9.816 max_d=9.816 avg_d=3.818 std_dev=2.824
OP2 B 0, 1.025, 4.042, 7.059, 10.292 max_d=10.292 avg_d=4.042 std_dev=3.017
P A 0, 0.729, 4.085, 7.441, 12.783 max_d=12.783 avg_d=4.085 std_dev=3.356
OP2 A 0, 0.593, 4.046, 7.498, 13.117 max_d=13.117 avg_d=4.046 std_dev=3.453
OP1 A 0, 1.161, 5.069, 8.978, 14.425 max_d=14.425 avg_d=5.069 std_dev=3.909

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.02 0.00 0.01 0.01 0.01 0.01 0.05 0.01 0.01 0.02 0.01 0.03 0.02 0.18 0.01 0.20 0.40 0.55 0.22
C2 0.02 0.00 0.14 0.18 0.01 0.05 0.01 0.11 0.01 0.01 0.00 0.01 0.01 0.13 0.13 0.08 0.46 0.63 0.62 0.39
C2' 0.00 0.14 0.00 0.00 0.04 0.01 0.10 0.12 0.13 0.03 0.11 0.05 0.24 0.00 0.03 0.01 0.38 0.52 0.45 0.35
C3' 0.01 0.18 0.00 0.00 0.26 0.01 0.26 0.02 0.23 0.16 0.23 0.28 0.17 0.02 0.01 0.02 0.41 0.45 0.30 0.30
C4 0.01 0.01 0.04 0.26 0.00 0.11 0.00 0.20 0.01 0.01 0.00 0.00 0.01 0.21 0.19 0.02 0.70 0.82 0.87 0.64
C4' 0.01 0.05 0.01 0.01 0.11 0.00 0.15 0.01 0.15 0.07 0.07 0.12 0.07 0.19 0.03 0.00 0.01 0.21 0.44 0.09
C5 0.01 0.01 0.10 0.26 0.00 0.15 0.00 0.24 0.00 0.01 0.01 0.01 0.02 0.25 0.23 0.06 0.75 0.82 0.90 0.68
C5' 0.05 0.11 0.12 0.02 0.20 0.01 0.24 0.00 0.21 0.11 0.14 0.22 0.10 0.08 0.14 0.01 0.01 0.28 0.42 0.02
C6 0.01 0.01 0.13 0.23 0.01 0.15 0.00 0.21 0.00 0.00 0.01 0.01 0.02 0.23 0.19 0.09 0.64 0.69 0.75 0.53
N1 0.01 0.01 0.03 0.16 0.01 0.07 0.01 0.11 0.00 0.00 0.01 0.01 0.02 0.12 0.10 0.01 0.45 0.58 0.62 0.36
N3 0.02 0.00 0.11 0.23 0.00 0.07 0.01 0.14 0.01 0.01 0.00 0.01 0.01 0.16 0.14 0.06 0.59 0.74 0.74 0.52
N4 0.01 0.01 0.05 0.28 0.00 0.12 0.01 0.22 0.01 0.01 0.01 0.00 0.02 0.23 0.22 0.03 0.76 0.89 0.98 0.72
O2 0.03 0.01 0.24 0.17 0.01 0.07 0.02 0.10 0.02 0.02 0.01 0.02 0.00 0.21 0.21 0.14 0.34 0.57 0.56 0.30
O2' 0.02 0.13 0.00 0.02 0.21 0.19 0.25 0.08 0.23 0.12 0.16 0.23 0.21 0.00 0.06 0.14 0.22 0.46 0.47 0.27
O3' 0.18 0.13 0.03 0.01 0.19 0.03 0.23 0.14 0.19 0.10 0.14 0.22 0.21 0.06 0.00 0.12 0.35 0.62 0.31 0.35
O4' 0.01 0.08 0.01 0.02 0.02 0.00 0.06 0.01 0.09 0.01 0.06 0.03 0.14 0.14 0.12 0.00 0.13 0.33 0.65 0.27
O5' 0.20 0.46 0.38 0.41 0.70 0.01 0.75 0.01 0.64 0.45 0.59 0.76 0.34 0.22 0.35 0.13 0.00 0.02 0.02 0.00
OP1 0.40 0.63 0.52 0.45 0.82 0.21 0.82 0.28 0.69 0.58 0.74 0.89 0.57 0.46 0.62 0.33 0.02 0.00 0.01 0.01
OP2 0.55 0.62 0.45 0.30 0.87 0.44 0.90 0.42 0.75 0.62 0.74 0.98 0.56 0.47 0.31 0.65 0.02 0.01 0.00 0.01
P 0.22 0.39 0.35 0.30 0.64 0.09 0.68 0.02 0.53 0.36 0.52 0.72 0.30 0.27 0.35 0.27 0.00 0.01 0.01 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.70 1.39 0.58 0.86 2.66 1.17 2.39 1.22 1.67 1.12 2.18 3.38 1.12 0.84 1.52 1.10 1.07 1.19 1.88 1.25
C2 0.58 1.44 0.40 0.73 2.32 1.19 1.97 1.30 1.36 1.00 2.09 2.85 1.41 0.58 1.29 1.03 1.15 1.32 1.62 1.25
C2' 0.64 1.49 0.59 0.80 2.81 1.12 2.49 1.30 1.73 1.17 2.34 3.61 1.23 0.84 1.40 1.04 1.13 1.27 2.03 1.36
C3' 0.88 1.57 0.76 1.00 2.98 1.24 2.73 1.48 1.97 1.35 2.41 3.83 1.24 1.00 1.54 1.25 1.32 1.53 2.35 1.63
C4 0.49 1.30 0.37 0.58 1.90 1.12 1.64 1.25 1.18 0.90 1.78 2.20 1.29 0.62 1.11 1.03 1.08 1.19 1.42 1.14
C4' 0.92 1.50 0.78 1.02 2.91 1.21 2.73 1.35 1.96 1.33 2.30 3.72 1.20 1.07 1.67 1.24 1.23 1.51 2.29 1.56
C5 0.61 1.20 0.41 0.66 2.15 1.09 2.00 1.17 1.48 1.02 1.80 2.49 0.89 0.66 1.27 1.16 0.98 0.98 1.60 1.07
C5' 1.06 1.59 0.89 1.13 2.95 1.25 2.84 1.44 2.08 1.44 2.32 3.73 1.38 1.21 1.77 1.34 1.35 1.79 2.49 1.77
C6 0.69 1.30 0.51 0.77 2.47 1.11 2.28 1.19 1.65 1.11 2.01 2.98 0.96 0.75 1.42 1.16 1.03 1.09 1.80 1.18
N1 0.64 1.35 0.49 0.78 2.49 1.15 2.22 1.22 1.55 1.06 2.09 3.09 1.12 0.71 1.42 1.09 1.06 1.14 1.74 1.18
N3 0.55 1.48 0.37 0.64 2.07 1.19 1.73 1.35 1.21 0.97 2.00 2.47 1.58 0.55 1.14 1.00 1.21 1.45 1.52 1.31
N4 0.50 1.35 0.50 0.49 1.53 1.09 1.26 1.31 0.94 0.86 1.61 1.71 1.54 0.83 0.90 0.95 1.15 1.36 1.32 1.23
O2 0.61 1.54 0.41 0.76 2.37 1.23 1.99 1.36 1.36 1.03 2.18 2.96 1.57 0.56 1.30 1.02 1.23 1.48 1.67 1.36
O2' 0.60 1.44 0.64 0.84 2.74 1.13 2.42 1.26 1.66 1.10 2.28 3.54 1.22 0.89 1.46 0.99 1.12 1.28 1.99 1.33
O3' 0.90 1.59 0.80 1.03 3.02 1.26 2.78 1.56 2.01 1.38 2.44 3.91 1.27 1.05 1.55 1.27 1.41 1.66 2.51 1.75
O4' 0.86 1.43 0.71 0.97 2.77 1.18 2.57 1.21 1.84 1.24 2.20 3.50 1.13 1.01 1.66 1.19 1.10 1.28 2.05 1.35
O5' 1.26 1.32 1.09 1.46 2.39 1.54 2.37 1.56 1.77 1.25 1.84 3.06 1.37 1.42 2.10 1.59 1.45 1.79 2.34 1.71
OP1 1.55 1.87 1.31 1.39 2.64 1.55 2.69 1.79 2.13 1.69 2.23 3.20 2.06 1.62 1.88 1.72 1.72 2.46 2.94 2.28
OP2 1.58 1.95 1.27 1.49 2.84 1.60 2.93 1.96 2.41 1.88 2.38 3.31 1.90 1.34 1.82 1.80 1.90 2.36 2.96 2.31
P 1.47 1.69 1.21 1.45 2.54 1.54 2.59 1.69 2.04 1.57 2.09 3.10 1.81 1.48 1.97 1.68 1.60 2.14 2.63 2.01

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.03 0.00 0.02 0.02 0.01 0.01 0.17 0.01 0.01 0.02 0.02 0.05 0.02 0.36 0.00 0.33 0.86 0.34 0.35
C2 0.03 0.00 0.19 0.29 0.01 0.18 0.01 0.38 0.01 0.01 0.01 0.02 0.01 0.20 0.25 0.17 0.58 1.20 0.78 0.60
C2' 0.00 0.19 0.00 0.00 0.06 0.02 0.14 0.28 0.18 0.03 0.15 0.07 0.35 0.00 0.04 0.02 0.51 0.75 0.63 0.55
C3' 0.02 0.29 0.00 0.00 0.37 0.01 0.40 0.03 0.35 0.23 0.34 0.40 0.34 0.02 0.01 0.03 0.26 0.33 0.30 0.22
C4 0.02 0.01 0.06 0.37 0.00 0.15 0.01 0.41 0.01 0.01 0.01 0.01 0.02 0.38 0.17 0.03 0.60 1.47 0.98 0.66
C4' 0.01 0.18 0.02 0.01 0.15 0.00 0.26 0.01 0.28 0.09 0.16 0.17 0.35 0.32 0.03 0.01 0.01 0.33 0.23 0.08
C5 0.01 0.01 0.14 0.40 0.01 0.26 0.00 0.54 0.00 0.01 0.01 0.01 0.02 0.42 0.23 0.13 0.71 1.60 1.10 0.84
C5' 0.17 0.38 0.28 0.03 0.41 0.01 0.54 0.00 0.54 0.30 0.39 0.43 0.60 0.13 0.26 0.03 0.01 0.34 0.40 0.02
C6 0.01 0.01 0.18 0.35 0.01 0.28 0.00 0.54 0.00 0.00 0.01 0.02 0.02 0.36 0.18 0.18 0.69 1.46 0.93 0.79
N1 0.01 0.01 0.03 0.23 0.01 0.09 0.01 0.30 0.00 0.00 0.01 0.02 0.02 0.22 0.16 0.02 0.45 1.15 0.59 0.47
N3 0.02 0.01 0.15 0.34 0.01 0.16 0.01 0.39 0.01 0.01 0.00 0.02 0.02 0.29 0.18 0.13 0.61 1.34 0.93 0.64
N4 0.02 0.02 0.07 0.40 0.01 0.17 0.01 0.43 0.02 0.02 0.02 0.00 0.03 0.42 0.21 0.04 0.63 1.54 1.11 0.71
O2 0.05 0.01 0.35 0.34 0.02 0.35 0.02 0.60 0.02 0.02 0.02 0.03 0.00 0.20 0.43 0.30 0.83 1.24 1.02 0.88
O2' 0.02 0.20 0.00 0.02 0.38 0.32 0.42 0.13 0.36 0.22 0.29 0.42 0.20 0.00 0.08 0.21 0.37 0.61 0.60 0.42
O3' 0.36 0.25 0.04 0.01 0.17 0.03 0.23 0.26 0.18 0.16 0.18 0.21 0.43 0.08 0.00 0.30 0.31 0.62 0.43 0.42
O4' 0.00 0.17 0.02 0.03 0.03 0.01 0.13 0.03 0.18 0.02 0.13 0.04 0.30 0.21 0.30 0.00 0.30 0.80 0.19 0.32
O5' 0.33 0.58 0.51 0.26 0.60 0.01 0.71 0.01 0.69 0.45 0.61 0.63 0.83 0.37 0.31 0.30 0.00 0.02 0.02 0.01
OP1 0.86 1.20 0.75 0.33 1.47 0.33 1.60 0.34 1.46 1.15 1.34 1.54 1.24 0.61 0.62 0.80 0.02 0.00 0.01 0.01
OP2 0.34 0.78 0.63 0.30 0.98 0.23 1.10 0.40 0.93 0.59 0.93 1.11 1.02 0.60 0.43 0.19 0.02 0.01 0.00 0.01
P 0.35 0.60 0.55 0.22 0.66 0.08 0.84 0.02 0.79 0.47 0.64 0.71 0.88 0.42 0.42 0.32 0.01 0.01 0.01 0.00