ClaRNA

Doublet Group distance statistics: 735

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Distances from reference structure (by RMSD)

1, 31, 23, 3, 0, 0, 0, 0, 0, 0, 0, 9, 12, 8, 7, 9, 2, 13, 28, 17,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
N1 B 0, 0.206, 0.655, 1.104, 1.419 max_d=1.419 avg_d=0.655 std_dev=0.449
N1 A 0, 0.160, 0.762, 1.363, 2.032 max_d=2.032 avg_d=0.762 std_dev=0.602
C1' B 0, 0.288, 0.929, 1.569, 3.537 max_d=3.537 avg_d=0.929 std_dev=0.641
C4 A 0, 0.317, 0.995, 1.673, 2.060 max_d=2.060 avg_d=0.995 std_dev=0.678
C2' B 0, 0.172, 0.913, 1.654, 5.316 max_d=5.316 avg_d=0.913 std_dev=0.741
C2 B 0, 0.143, 0.893, 1.643, 2.148 max_d=2.148 avg_d=0.893 std_dev=0.750
C5 A 0, 0.267, 1.047, 1.828, 2.169 max_d=2.169 avg_d=1.047 std_dev=0.781
C6 B 0, 0.139, 0.926, 1.712, 2.558 max_d=2.558 avg_d=0.926 std_dev=0.786
O2' B 0, 0.247, 1.109, 1.970, 6.045 max_d=6.045 avg_d=1.109 std_dev=0.862
N3 B 0, 0.128, 1.019, 1.910, 2.987 max_d=2.987 avg_d=1.019 std_dev=0.891
C1' A 0, 0.323, 1.244, 2.166, 2.849 max_d=2.849 avg_d=1.244 std_dev=0.921
C2' A 0, 0.535, 1.469, 2.403, 3.362 max_d=3.362 avg_d=1.469 std_dev=0.934
C5 B 0, 0.063, 1.067, 2.070, 3.491 max_d=3.491 avg_d=1.067 std_dev=1.003
C6 A 0, 0.370, 1.375, 2.380, 2.717 max_d=2.717 avg_d=1.375 std_dev=1.005
C2 A 0, 0.295, 1.324, 2.353, 3.290 max_d=3.290 avg_d=1.324 std_dev=1.029
C4 B 0, -0.142, 0.894, 1.930, 3.417 max_d=3.417 avg_d=0.894 std_dev=1.036
O2' A 0, 0.283, 1.402, 2.521, 3.612 max_d=3.612 avg_d=1.402 std_dev=1.119
O4' B 0, 0.464, 1.587, 2.711, 5.078 max_d=5.078 avg_d=1.587 std_dev=1.123
N4 A 0, 0.398, 1.542, 2.685, 3.329 max_d=3.329 avg_d=1.542 std_dev=1.143
C3' B 0, 0.208, 1.397, 2.586, 7.355 max_d=7.355 avg_d=1.397 std_dev=1.189
O2 B 0, 0.138, 1.341, 2.545, 3.625 max_d=3.625 avg_d=1.341 std_dev=1.203
N3 A 0, 0.385, 1.691, 2.998, 3.613 max_d=3.613 avg_d=1.691 std_dev=1.307
O3' B 0, 0.351, 1.686, 3.020, 8.165 max_d=8.165 avg_d=1.686 std_dev=1.335
O4 B 0, -0.078, 1.287, 2.651, 4.773 max_d=4.773 avg_d=1.287 std_dev=1.364
C4' B 0, 0.299, 1.896, 3.492, 6.975 max_d=6.975 avg_d=1.896 std_dev=1.596
O2 A 0, 0.429, 2.126, 3.822, 5.069 max_d=5.069 avg_d=2.126 std_dev=1.697
O5' B 0, 0.713, 2.511, 4.309, 6.890 max_d=6.890 avg_d=2.511 std_dev=1.798
C3' A 0, 0.726, 2.568, 4.411, 5.905 max_d=5.905 avg_d=2.568 std_dev=1.843
C5' B 0, 0.639, 2.498, 4.356, 6.846 max_d=6.846 avg_d=2.498 std_dev=1.859
O4' A 0, 0.537, 2.469, 4.402, 5.283 max_d=5.283 avg_d=2.469 std_dev=1.932
O3' A 0, 0.865, 2.991, 5.117, 7.114 max_d=7.114 avg_d=2.991 std_dev=2.126
C4' A 0, 0.736, 3.018, 5.300, 6.639 max_d=6.639 avg_d=3.018 std_dev=2.282
OP2 B 0, 0.937, 3.277, 5.617, 6.748 max_d=6.748 avg_d=3.277 std_dev=2.340
P B 0, 0.255, 2.901, 5.546, 7.198 max_d=7.198 avg_d=2.901 std_dev=2.645
C5' A 0, 1.120, 4.403, 7.687, 8.888 max_d=8.888 avg_d=4.403 std_dev=3.284
O5' A 0, 1.233, 4.553, 7.873, 9.642 max_d=9.642 avg_d=4.553 std_dev=3.320
OP1 B 0, 0.711, 4.059, 7.407, 9.553 max_d=9.553 avg_d=4.059 std_dev=3.348
OP2 A 0, 1.480, 5.666, 9.851, 11.211 max_d=11.211 avg_d=5.666 std_dev=4.185
P A 0, 1.552, 5.830, 10.108, 11.752 max_d=11.752 avg_d=5.830 std_dev=4.278
OP1 A 0, 1.930, 6.768, 11.607, 13.396 max_d=13.396 avg_d=6.768 std_dev=4.839

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.03 0.00 0.03 0.02 0.03 0.02 0.09 0.02 0.01 0.03 0.02 0.05 0.02 0.21 0.01 0.22 0.30 0.44 0.21
C2 0.03 0.00 0.27 0.36 0.01 0.09 0.01 0.22 0.01 0.01 0.01 0.02 0.01 0.17 0.26 0.20 0.52 0.62 0.87 0.57
C2' 0.00 0.27 0.00 0.01 0.06 0.03 0.21 0.16 0.27 0.03 0.20 0.06 0.49 0.01 0.03 0.02 0.29 0.47 0.64 0.42
C3' 0.03 0.36 0.01 0.00 0.37 0.01 0.29 0.03 0.22 0.23 0.41 0.40 0.38 0.02 0.01 0.03 0.27 0.51 0.44 0.32
C4 0.02 0.01 0.06 0.37 0.00 0.20 0.01 0.48 0.01 0.01 0.01 0.01 0.02 0.31 0.29 0.04 0.76 0.87 1.23 0.91
C4' 0.03 0.09 0.03 0.01 0.20 0.00 0.30 0.01 0.29 0.11 0.11 0.22 0.19 0.26 0.03 0.01 0.02 0.28 0.32 0.11
C5 0.02 0.01 0.21 0.29 0.01 0.30 0.00 0.63 0.01 0.01 0.01 0.01 0.02 0.42 0.23 0.15 0.81 0.86 1.16 0.94
C5' 0.09 0.22 0.16 0.03 0.48 0.01 0.63 0.00 0.58 0.29 0.31 0.52 0.23 0.18 0.17 0.03 0.01 0.29 0.29 0.02
C6 0.02 0.01 0.27 0.22 0.01 0.29 0.01 0.58 0.00 0.01 0.01 0.02 0.02 0.40 0.16 0.21 0.70 0.67 0.89 0.75
N1 0.01 0.01 0.03 0.23 0.01 0.11 0.01 0.29 0.01 0.00 0.01 0.02 0.02 0.18 0.14 0.02 0.49 0.51 0.71 0.50
N3 0.03 0.01 0.20 0.41 0.01 0.11 0.01 0.31 0.01 0.01 0.00 0.01 0.02 0.21 0.31 0.15 0.65 0.78 1.10 0.76
N4 0.02 0.02 0.06 0.40 0.01 0.22 0.01 0.52 0.02 0.02 0.01 0.00 0.03 0.34 0.33 0.05 0.82 0.98 1.38 1.02
O2 0.05 0.01 0.49 0.38 0.02 0.19 0.02 0.23 0.02 0.02 0.02 0.03 0.00 0.33 0.33 0.33 0.43 0.59 0.77 0.47
O2' 0.02 0.17 0.01 0.02 0.31 0.26 0.42 0.18 0.40 0.18 0.21 0.34 0.33 0.00 0.08 0.22 0.23 0.40 0.68 0.38
O3' 0.21 0.26 0.03 0.01 0.29 0.03 0.23 0.17 0.16 0.14 0.31 0.33 0.33 0.08 0.00 0.16 0.27 0.70 0.47 0.37
O4' 0.01 0.20 0.02 0.03 0.04 0.01 0.15 0.03 0.21 0.02 0.15 0.05 0.33 0.22 0.16 0.00 0.24 0.31 0.29 0.19
O5' 0.22 0.52 0.29 0.27 0.76 0.02 0.81 0.01 0.70 0.49 0.65 0.82 0.43 0.23 0.27 0.24 0.00 0.02 0.02 0.01
OP1 0.30 0.62 0.47 0.51 0.87 0.28 0.86 0.29 0.67 0.51 0.78 0.98 0.59 0.40 0.70 0.31 0.02 0.00 0.01 0.01
OP2 0.44 0.87 0.64 0.44 1.23 0.32 1.16 0.29 0.89 0.71 1.10 1.38 0.77 0.68 0.47 0.29 0.02 0.01 0.00 0.01
P 0.21 0.57 0.42 0.32 0.91 0.11 0.94 0.02 0.75 0.50 0.76 1.02 0.47 0.38 0.37 0.19 0.01 0.01 0.01 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 1.39 1.53 0.85 1.14 2.01 1.66 1.86 1.48 1.58 1.45 1.81 1.48 0.57 1.47 2.31 1.77 0.97 1.07 0.86 0.75
C2 0.99 1.21 0.59 0.76 1.86 1.19 1.80 1.10 1.44 1.15 1.53 1.21 0.38 1.08 2.15 1.26 0.81 1.00 1.00 0.74
C2' 1.14 1.27 0.74 1.06 1.82 1.50 1.65 1.32 1.33 1.17 1.60 1.23 0.60 1.44 2.16 1.52 0.81 0.99 1.01 0.71
C3' 1.53 1.54 1.08 1.49 2.00 1.96 1.82 1.76 1.56 1.47 1.82 1.51 0.83 1.90 2.33 1.96 1.15 1.35 0.94 0.92
C4 0.79 0.85 0.50 0.70 1.37 1.07 1.43 0.95 1.19 0.87 1.09 0.88 0.38 1.06 1.51 1.05 0.68 0.89 0.90 0.61
C4' 1.79 1.88 1.20 1.58 2.31 2.17 2.14 1.99 1.91 1.81 2.15 1.80 0.86 1.91 2.59 2.27 1.39 1.52 0.96 1.10
C5 1.13 0.94 0.73 1.07 1.27 1.48 1.26 1.24 1.11 0.99 1.08 0.94 0.59 1.48 1.40 1.47 0.74 0.84 0.72 0.51
C5' 2.22 2.23 1.59 2.01 2.52 2.64 2.40 2.46 2.25 2.19 2.42 2.18 1.19 2.35 2.72 2.74 1.83 1.94 1.16 1.48
C6 1.32 1.24 0.84 1.20 1.56 1.67 1.49 1.43 1.32 1.23 1.40 1.22 0.63 1.58 1.74 1.71 0.89 0.97 0.76 0.64
N1 1.24 1.34 0.76 1.03 1.82 1.51 1.71 1.32 1.44 1.28 1.59 1.31 0.52 1.37 2.07 1.59 0.86 0.97 0.83 0.65
N3 0.77 1.01 0.47 0.60 1.69 0.99 1.72 0.97 1.36 0.98 1.32 1.04 0.32 0.94 1.91 1.00 0.79 1.04 1.09 0.80
N4 0.49 0.76 0.35 0.50 1.23 0.81 1.33 0.80 1.11 0.72 1.00 0.82 0.36 0.88 1.35 0.72 0.69 0.97 1.04 0.75
O2 0.95 1.28 0.56 0.69 2.02 1.12 1.94 1.09 1.52 1.19 1.65 1.27 0.34 0.99 2.39 1.20 0.87 1.10 1.13 0.86
O2' 1.01 1.24 0.69 0.96 1.89 1.37 1.72 1.23 1.36 1.13 1.62 1.15 0.62 1.29 2.26 1.38 0.84 1.02 1.20 0.84
O3' 1.51 1.59 1.09 1.50 2.22 1.97 2.01 1.79 1.68 1.51 1.96 1.49 0.85 1.90 2.63 1.95 1.22 1.45 1.10 1.04
O4' 1.68 1.85 1.03 1.34 2.30 1.94 2.12 1.76 1.87 1.76 2.14 1.76 0.70 1.65 2.57 2.13 1.21 1.28 0.88 0.93
O5' 2.14 1.96 1.56 2.09 2.13 2.65 2.07 2.44 1.99 1.97 2.05 1.97 1.16 2.53 2.29 2.66 1.78 1.88 1.18 1.44
OP1 2.41 2.13 1.92 2.51 2.34 3.02 2.35 2.85 2.26 2.20 2.19 2.16 1.55 2.98 2.50 2.93 2.20 2.35 1.65 1.88
OP2 2.45 2.20 1.99 2.47 2.24 2.89 2.27 2.63 2.25 2.26 2.18 2.25 1.70 3.00 2.28 2.84 2.03 2.08 1.56 1.69
P 2.41 2.16 1.88 2.44 2.25 2.97 2.25 2.75 2.22 2.21 2.18 2.21 1.50 2.92 2.34 2.92 2.08 2.18 1.38 1.69

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.03 0.01 0.02 0.03 0.01 0.02 0.07 0.02 0.01 0.03 0.05 0.02 0.21 0.03 0.01 0.17 0.32 0.29 0.19
C2 0.03 0.00 0.14 0.13 0.01 0.09 0.02 0.15 0.01 0.01 0.01 0.01 0.25 0.18 0.02 0.13 0.28 0.58 0.40 0.28
C2' 0.01 0.14 0.00 0.00 0.07 0.02 0.11 0.16 0.14 0.03 0.11 0.23 0.01 0.03 0.08 0.02 0.36 0.39 0.69 0.43
C3' 0.02 0.13 0.00 0.00 0.20 0.01 0.23 0.02 0.21 0.12 0.16 0.15 0.02 0.01 0.22 0.02 0.20 0.21 0.65 0.24
C4 0.03 0.01 0.07 0.20 0.00 0.10 0.01 0.22 0.01 0.02 0.01 0.02 0.22 0.12 0.01 0.04 0.39 0.79 0.70 0.40
C4' 0.01 0.09 0.02 0.01 0.10 0.00 0.15 0.01 0.16 0.05 0.08 0.18 0.17 0.03 0.10 0.01 0.02 0.15 0.35 0.07
C5 0.02 0.02 0.11 0.23 0.01 0.15 0.00 0.30 0.01 0.01 0.01 0.02 0.25 0.16 0.01 0.12 0.45 0.80 0.80 0.46
C5' 0.07 0.15 0.16 0.02 0.22 0.01 0.30 0.00 0.28 0.14 0.17 0.24 0.08 0.14 0.24 0.02 0.01 0.24 0.30 0.02
C6 0.02 0.01 0.14 0.21 0.01 0.16 0.01 0.28 0.00 0.01 0.01 0.02 0.24 0.14 0.02 0.14 0.41 0.66 0.62 0.40
N1 0.01 0.01 0.03 0.12 0.02 0.05 0.01 0.14 0.01 0.00 0.01 0.02 0.13 0.11 0.02 0.02 0.26 0.51 0.37 0.25
N3 0.03 0.01 0.11 0.16 0.01 0.08 0.01 0.17 0.01 0.01 0.00 0.02 0.25 0.13 0.02 0.08 0.33 0.70 0.53 0.33
O2 0.05 0.01 0.23 0.15 0.02 0.18 0.02 0.24 0.02 0.02 0.02 0.00 0.40 0.30 0.03 0.23 0.32 0.56 0.41 0.33
O2' 0.02 0.25 0.01 0.02 0.22 0.17 0.25 0.08 0.24 0.13 0.25 0.40 0.00 0.06 0.24 0.12 0.33 0.38 0.85 0.46
O3' 0.21 0.18 0.03 0.01 0.12 0.03 0.16 0.14 0.14 0.11 0.13 0.30 0.06 0.00 0.14 0.16 0.20 0.35 0.66 0.25
O4 0.03 0.02 0.08 0.22 0.01 0.10 0.01 0.24 0.02 0.02 0.02 0.03 0.24 0.14 0.00 0.05 0.42 0.85 0.79 0.44
O4' 0.01 0.13 0.02 0.02 0.04 0.01 0.12 0.02 0.14 0.02 0.08 0.23 0.12 0.16 0.05 0.00 0.15 0.25 0.32 0.22
O5' 0.17 0.28 0.36 0.20 0.39 0.02 0.45 0.01 0.41 0.26 0.33 0.32 0.33 0.20 0.42 0.15 0.00 0.02 0.02 0.01
OP1 0.32 0.58 0.39 0.21 0.79 0.15 0.80 0.24 0.66 0.51 0.70 0.56 0.38 0.35 0.85 0.25 0.02 0.00 0.01 0.01
OP2 0.29 0.40 0.69 0.65 0.70 0.35 0.80 0.30 0.62 0.37 0.53 0.41 0.85 0.66 0.79 0.32 0.02 0.01 0.00 0.01
P 0.19 0.28 0.43 0.24 0.40 0.07 0.46 0.02 0.40 0.25 0.33 0.33 0.46 0.25 0.44 0.22 0.01 0.01 0.01 0.00