sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8O-A1013-A986
X
>3KNI-A2775-A2625
X
>3KNK-A2775-A2625
X
>2ZJR-X2655-X2507
X
>2J03-A2747-A2597
X
>2J01-A2747-A2597
X
>3OH7-A2700-A2550
X
>3OH5-A2700-A2550
X
>3OHJ-A2700-A2550
X
>3OHK-A2700-A2550
X
>3OI1-A2700-A2550
X
>3OHZ-A2700-A2550
X
</seq>
<hsp>
0 1:0.887867480767
0 2:1.0
0 3:0.949241983077
0 4:0.96865757864
0 5:0.968132206383
0 6:0.945246934341
0 7:0.943756058644
0 8:0.963860915474
0 9:0.962222040437
0 10:0.966228648421
0 11:0.966126469108
1 2:0.193096309236
1 3:0.111103408879
1 4:0.138974062883
1 5:0.136635392267
1 6:0.11825970622
1 7:0.115830330622
1 8:0.118218947135
1 9:0.120240421873
1 10:0.121719047753
1 11:0.113482916644
2 3:0.161699997008
2 4:0.0966809227104
2 5:0.0977667008164
2 6:0.0885161267026
2 7:0.0917244608176
2 8:0.108075857433
2 9:0.101402492356
2 10:0.0900462708523
2 11:0.0996659836008
3 4:0.103819172751
3 5:0.100192908939
3 6:0.108214155421
3 7:0.103143583481
3 8:0.072459111459
3 9:0.0794289406445
3 10:0.0944200245567
3 11:0.0834037662109
4 5:0.00490556237894
4 6:0.0636582862627
4 7:0.0637238165008
4 8:0.0729376546894
4 9:0.0788667946249
4 10:0.0733440064989
4 11:0.0708583958313
5 6:0.0623347582492
5 7:0.0620980060521
5 8:0.0696723694357
5 9:0.0758342339236
5 10:0.0706387069831
5 11:0.0677658927496
6 7:0.00815706091655
6 8:0.0708463109784
6 9:0.0669754644903
6 10:0.061456301574
6 11:0.0614579547338
7 8:0.0692413529537
7 9:0.0659868922022
7 10:0.0601038131797
7 11:0.0587228230334
8 9:0.0176856681042
8 10:0.051087824258
8 11:0.0460660299893
9 10:0.0453411521748
9 11:0.045269316319
10 11:0.018721565763
</hsp>