Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:01086:01018
Extra
PDB:
ATOM 1 O3' C A1085 45.671 99.356 111.833 1.00 46.83 O
ATOM 2 P C A1086 47.099 99.203 111.093 1.00 48.27 P
ATOM 3 OP1 C A1086 46.983 99.737 109.715 1.00 48.36 O
ATOM 4 OP2 C A1086 47.594 97.813 111.296 1.00 47.35 O
ATOM 5 O5' C A1086 48.037 100.207 111.888 1.00 46.14 O
ATOM 6 C5' C A1086 49.373 99.852 112.238 1.00 45.90 C
ATOM 7 C4' C A1086 50.121 101.081 112.667 1.00 45.84 C
ATOM 8 O4' C A1086 50.308 101.940 111.521 1.00 44.41 O
ATOM 9 C3' C A1086 49.395 101.940 113.686 1.00 44.93 C
ATOM 10 O3' C A1086 49.670 101.478 115.007 1.00 47.46 O
ATOM 11 C2' C A1086 50.004 103.313 113.442 1.00 44.48 C
ATOM 12 O2' C A1086 51.258 103.436 114.083 1.00 42.97 O
ATOM 13 C1' C A1086 50.209 103.295 111.921 1.00 43.83 C
ATOM 14 N1 C A1086 49.160 103.943 111.101 1.00 43.24 N
ATOM 15 C2 C A1086 48.941 105.327 111.222 1.00 42.24 C
ATOM 16 O2 C A1086 49.617 105.982 112.027 1.00 41.79 O
ATOM 17 N3 C A1086 47.999 105.910 110.453 1.00 42.65 N
ATOM 18 C4 C A1086 47.292 105.178 109.589 1.00 43.93 C
ATOM 19 N4 C A1086 46.374 105.803 108.837 1.00 45.42 N
ATOM 20 C5 C A1086 47.489 103.775 109.451 1.00 42.24 C
ATOM 21 C6 C A1086 48.417 103.205 110.220 1.00 42.32 C
ATOM 22 P U A1087 48.463 101.128 116.009 1.00 48.36 P
ATOM 23 OP1 U A1087 49.032 101.088 117.380 1.00 47.87 O
ATOM 24 OP2 U A1087 47.769 99.926 115.472 1.00 47.26 O
ATOM 25 O5' U A1087 47.508 102.398 115.912 1.00 47.41 O
TER
ATOM 1 O3' A B1017 54.529 98.889 110.050 1.00 45.74 O
ATOM 2 P G B1018 53.256 98.008 110.490 1.00 47.57 P
ATOM 3 OP1 G B1018 52.765 98.531 111.801 1.00 43.82 O
ATOM 4 OP2 G B1018 53.603 96.570 110.348 1.00 48.84 O
ATOM 5 O5' G B1018 52.174 98.344 109.376 1.00 44.78 O
ATOM 6 C5' G B1018 51.672 99.673 109.247 1.00 42.59 C
ATOM 7 C4' G B1018 51.817 100.146 107.828 1.00 40.06 C
ATOM 8 O4' G B1018 51.238 101.473 107.739 1.00 38.91 O
ATOM 9 C3' G B1018 53.243 100.272 107.304 1.00 38.37 C
ATOM 10 O3' G B1018 53.203 100.094 105.891 1.00 39.42 O
ATOM 11 C2' G B1018 53.563 101.730 107.610 1.00 38.72 C
ATOM 12 O2' G B1018 54.562 102.240 106.757 1.00 38.84 O
ATOM 13 C1' G B1018 52.217 102.384 107.302 1.00 39.21 C
ATOM 14 N9 G B1018 51.914 103.689 107.883 1.00 39.47 N
ATOM 15 C8 G B1018 52.581 104.367 108.875 1.00 40.25 C
ATOM 16 N7 G B1018 52.043 105.525 109.155 1.00 40.00 N
ATOM 17 C5 G B1018 50.956 105.614 108.300 1.00 40.52 C
ATOM 18 C6 G B1018 49.995 106.642 108.137 1.00 41.04 C
ATOM 19 O6 G B1018 49.899 107.713 108.743 1.00 41.80 O
ATOM 20 N1 G B1018 49.071 106.324 107.149 1.00 41.90 N
ATOM 21 C2 G B1018 49.064 105.162 106.417 1.00 42.34 C
ATOM 22 N2 G B1018 48.083 105.033 105.516 1.00 44.44 N
ATOM 23 N3 G B1018 49.950 104.197 106.560 1.00 41.51 N
ATOM 24 C4 G B1018 50.863 104.488 107.511 1.00 40.90 C
ATOM 25 P C B1019 53.972 98.863 105.203 1.00 42.51 P
ATOM 26 OP1 C B1019 53.473 98.744 103.809 1.00 43.61 O
ATOM 27 OP2 C B1019 53.899 97.681 106.099 1.00 43.06 O
ATOM 28 O5' C B1019 55.478 99.367 105.098 1.00 40.89 O
TER
ATOM 2 P C A1086 47.099 99.203 111.093 1.00 48.27 P
ATOM 3 OP1 C A1086 46.983 99.737 109.715 1.00 48.36 O
ATOM 4 OP2 C A1086 47.594 97.813 111.296 1.00 47.35 O
ATOM 5 O5' C A1086 48.037 100.207 111.888 1.00 46.14 O
ATOM 6 C5' C A1086 49.373 99.852 112.238 1.00 45.90 C
ATOM 7 C4' C A1086 50.121 101.081 112.667 1.00 45.84 C
ATOM 8 O4' C A1086 50.308 101.940 111.521 1.00 44.41 O
ATOM 9 C3' C A1086 49.395 101.940 113.686 1.00 44.93 C
ATOM 10 O3' C A1086 49.670 101.478 115.007 1.00 47.46 O
ATOM 11 C2' C A1086 50.004 103.313 113.442 1.00 44.48 C
ATOM 12 O2' C A1086 51.258 103.436 114.083 1.00 42.97 O
ATOM 13 C1' C A1086 50.209 103.295 111.921 1.00 43.83 C
ATOM 14 N1 C A1086 49.160 103.943 111.101 1.00 43.24 N
ATOM 15 C2 C A1086 48.941 105.327 111.222 1.00 42.24 C
ATOM 16 O2 C A1086 49.617 105.982 112.027 1.00 41.79 O
ATOM 17 N3 C A1086 47.999 105.910 110.453 1.00 42.65 N
ATOM 18 C4 C A1086 47.292 105.178 109.589 1.00 43.93 C
ATOM 19 N4 C A1086 46.374 105.803 108.837 1.00 45.42 N
ATOM 20 C5 C A1086 47.489 103.775 109.451 1.00 42.24 C
ATOM 21 C6 C A1086 48.417 103.205 110.220 1.00 42.32 C
ATOM 22 P U A1087 48.463 101.128 116.009 1.00 48.36 P
ATOM 23 OP1 U A1087 49.032 101.088 117.380 1.00 47.87 O
ATOM 24 OP2 U A1087 47.769 99.926 115.472 1.00 47.26 O
ATOM 25 O5' U A1087 47.508 102.398 115.912 1.00 47.41 O
TER
ATOM 1 O3' A B1017 54.529 98.889 110.050 1.00 45.74 O
ATOM 2 P G B1018 53.256 98.008 110.490 1.00 47.57 P
ATOM 3 OP1 G B1018 52.765 98.531 111.801 1.00 43.82 O
ATOM 4 OP2 G B1018 53.603 96.570 110.348 1.00 48.84 O
ATOM 5 O5' G B1018 52.174 98.344 109.376 1.00 44.78 O
ATOM 6 C5' G B1018 51.672 99.673 109.247 1.00 42.59 C
ATOM 7 C4' G B1018 51.817 100.146 107.828 1.00 40.06 C
ATOM 8 O4' G B1018 51.238 101.473 107.739 1.00 38.91 O
ATOM 9 C3' G B1018 53.243 100.272 107.304 1.00 38.37 C
ATOM 10 O3' G B1018 53.203 100.094 105.891 1.00 39.42 O
ATOM 11 C2' G B1018 53.563 101.730 107.610 1.00 38.72 C
ATOM 12 O2' G B1018 54.562 102.240 106.757 1.00 38.84 O
ATOM 13 C1' G B1018 52.217 102.384 107.302 1.00 39.21 C
ATOM 14 N9 G B1018 51.914 103.689 107.883 1.00 39.47 N
ATOM 15 C8 G B1018 52.581 104.367 108.875 1.00 40.25 C
ATOM 16 N7 G B1018 52.043 105.525 109.155 1.00 40.00 N
ATOM 17 C5 G B1018 50.956 105.614 108.300 1.00 40.52 C
ATOM 18 C6 G B1018 49.995 106.642 108.137 1.00 41.04 C
ATOM 19 O6 G B1018 49.899 107.713 108.743 1.00 41.80 O
ATOM 20 N1 G B1018 49.071 106.324 107.149 1.00 41.90 N
ATOM 21 C2 G B1018 49.064 105.162 106.417 1.00 42.34 C
ATOM 22 N2 G B1018 48.083 105.033 105.516 1.00 44.44 N
ATOM 23 N3 G B1018 49.950 104.197 106.560 1.00 41.51 N
ATOM 24 C4 G B1018 50.863 104.488 107.511 1.00 40.90 C
ATOM 25 P C B1019 53.972 98.863 105.203 1.00 42.51 P
ATOM 26 OP1 C B1019 53.473 98.744 103.809 1.00 43.61 O
ATOM 27 OP2 C B1019 53.899 97.681 106.099 1.00 43.06 O
ATOM 28 O5' C B1019 55.478 99.367 105.098 1.00 40.89 O
TER
Atoms:
C2: (48.941,105.327,111.222)
OP1: (46.983,99.737,109.715)
OP2: (47.594,97.813,111.296)
C4: (47.292,105.178,109.589)
O5': (48.037,100.207,111.888)
C3': (49.395,101.940,113.686)
C1': (50.209,103.295,111.921)
O4': (50.308,101.940,111.521)
C5': (49.373,99.852,112.238)
P: (47.099,99.203,111.093)
O2: (49.617,105.982,112.027)
C4': (50.121,101.081,112.667)
C2': (50.004,103.313,113.442)
O2': (51.258,103.436,114.083)
N1: (49.160,103.943,111.101)
N3: (47.999,105.910,110.453)
N4: (46.374,105.803,108.837)
C6: (48.417,103.205,110.220)
C5: (47.489,103.775,109.451)
O3': (49.670,101.478,115.007)
OP1: (46.983,99.737,109.715)
OP2: (47.594,97.813,111.296)
C4: (47.292,105.178,109.589)
O5': (48.037,100.207,111.888)
C3': (49.395,101.940,113.686)
C1': (50.209,103.295,111.921)
O4': (50.308,101.940,111.521)
C5': (49.373,99.852,112.238)
P: (47.099,99.203,111.093)
O2: (49.617,105.982,112.027)
C4': (50.121,101.081,112.667)
C2': (50.004,103.313,113.442)
O2': (51.258,103.436,114.083)
N1: (49.160,103.943,111.101)
N3: (47.999,105.910,110.453)
N4: (46.374,105.803,108.837)
C6: (48.417,103.205,110.220)
C5: (47.489,103.775,109.451)
O3': (49.670,101.478,115.007)
OP1: (52.765,98.531,111.801)
OP2: (53.603,96.570,110.348)
C3': (53.243,100.272,107.304)
C1': (52.217,102.384,107.302)
C5': (51.672,99.673,109.247)
O6: (49.899,107.713,108.743)
O4': (51.238,101.473,107.739)
C8: (52.581,104.367,108.875)
C2: (49.064,105.162,106.417)
C6: (49.995,106.642,108.137)
C5: (50.956,105.614,108.300)
C4: (50.863,104.488,107.511)
P: (53.256,98.008,110.490)
C4': (51.817,100.146,107.828)
C2': (53.563,101.730,107.610)
O2': (54.562,102.240,106.757)
N1: (49.071,106.324,107.149)
N2: (48.083,105.033,105.516)
N3: (49.950,104.197,106.560)
N7: (52.043,105.525,109.155)
N9: (51.914,103.689,107.883)
O5': (52.174,98.344,109.376)
O3': (53.203,100.094,105.891)
OP2: (53.603,96.570,110.348)
C3': (53.243,100.272,107.304)
C1': (52.217,102.384,107.302)
C5': (51.672,99.673,109.247)
O6: (49.899,107.713,108.743)
O4': (51.238,101.473,107.739)
C8: (52.581,104.367,108.875)
C2: (49.064,105.162,106.417)
C6: (49.995,106.642,108.137)
C5: (50.956,105.614,108.300)
C4: (50.863,104.488,107.511)
P: (53.256,98.008,110.490)
C4': (51.817,100.146,107.828)
C2': (53.563,101.730,107.610)
O2': (54.562,102.240,106.757)
N1: (49.071,106.324,107.149)
N2: (48.083,105.033,105.516)
N3: (49.950,104.197,106.560)
N7: (52.043,105.525,109.155)
N9: (51.914,103.689,107.883)
O5': (52.174,98.344,109.376)
O3': (53.203,100.094,105.891)
Image (generated by PyMOL):