Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12556:12364
Extra
PDB:
ATOM 1 O3' A A2555 20.951 -28.411 80.992 1.00 48.20 O
ATOM 2 P A A2556 19.533 -28.661 80.252 1.00 32.99 P
ATOM 3 OP1 A A2556 18.887 -29.831 80.918 1.00 33.23 O
ATOM 4 OP2 A A2556 19.797 -28.723 78.820 1.00 32.88 O
ATOM 5 O5' A A2556 18.675 -27.374 80.578 1.00 32.96 O
ATOM 6 C5' A A2556 18.992 -26.098 80.102 1.00 32.77 C
ATOM 7 C4' A A2556 17.958 -25.130 80.584 1.00 32.81 C
ATOM 8 O4' A A2556 18.030 -24.913 82.018 1.00 32.89 O
ATOM 9 C3' A A2556 18.000 -23.768 79.986 1.00 32.64 C
ATOM 10 O3' A A2556 17.466 -23.833 78.685 1.00 32.62 O
ATOM 11 C2' A A2556 17.151 -22.977 80.980 1.00 32.74 C
ATOM 12 O2' A A2556 15.820 -23.191 80.700 1.00 32.87 O
ATOM 13 C1' A A2556 17.444 -23.676 82.317 1.00 32.87 C
ATOM 14 N9 A A2556 18.363 -22.884 83.159 1.00 32.79 N
ATOM 15 C8 A A2556 19.732 -22.944 83.231 1.00 32.68 C
ATOM 16 N7 A A2556 20.300 -22.023 83.995 1.00 32.64 N
ATOM 17 C5 A A2556 19.231 -21.297 84.475 1.00 32.73 C
ATOM 18 C6 A A2556 19.151 -20.183 85.329 1.00 32.75 C
ATOM 19 N6 A A2556 20.205 -19.620 85.884 1.00 32.69 N
ATOM 20 N1 A A2556 17.923 -19.670 85.605 1.00 32.87 N
ATOM 21 C2 A A2556 16.868 -20.242 85.009 1.00 32.94 C
ATOM 22 N3 A A2556 16.834 -21.285 84.182 1.00 32.92 N
ATOM 23 C4 A A2556 18.038 -21.801 83.957 1.00 32.82 C
ATOM 24 P G A2557 17.498 -22.627 77.648 1.00 34.02 P
ATOM 25 OP1 G A2557 16.733 -23.085 76.494 1.00 34.08 O
ATOM 26 OP2 G A2557 18.913 -22.209 77.429 1.00 33.84 O
ATOM 27 O5' G A2557 16.717 -21.495 78.412 1.00 34.06 O
TER
ATOM 1 O3' U B2363 29.940 -22.981 86.006 1.00 37.23 O
ATOM 2 P U B2364 29.886 -22.024 84.725 1.00 37.99 P
ATOM 3 OP1 U B2364 31.277 -21.982 84.165 1.00 37.88 O
ATOM 4 OP2 U B2364 29.251 -20.770 85.144 1.00 37.98 O
ATOM 5 O5' U B2364 28.925 -22.800 83.736 1.00 37.98 O
ATOM 6 C5' U B2364 29.156 -24.148 83.424 1.00 38.05 C
ATOM 7 C4' U B2364 27.889 -24.825 83.004 1.00 38.13 C
ATOM 8 O4' U B2364 26.947 -24.815 84.096 1.00 38.28 O
ATOM 9 C3' U B2364 27.126 -24.167 81.874 1.00 38.01 C
ATOM 10 O3' U B2364 27.642 -24.491 80.611 1.00 37.90 O
ATOM 11 C2' U B2364 25.737 -24.698 82.081 1.00 38.15 C
ATOM 12 O2' U B2364 25.682 -26.045 81.683 1.00 38.25 O
ATOM 13 C1' U B2364 25.640 -24.681 83.584 1.00 38.29 C
ATOM 14 N1 U B2364 25.044 -23.439 84.098 1.00 38.28 N
ATOM 15 C2 U B2364 23.672 -23.319 83.943 1.00 38.34 C
ATOM 16 O2 U B2364 22.963 -24.152 83.362 1.00 38.40 O
ATOM 17 N3 U B2364 23.173 -22.174 84.479 1.00 38.34 N
ATOM 18 C4 U B2364 23.880 -21.246 85.150 1.00 38.30 C
ATOM 19 O4 U B2364 23.286 -20.286 85.591 1.00 38.33 O
ATOM 20 C5 U B2364 25.273 -21.465 85.299 1.00 38.24 C
ATOM 21 C6 U B2364 25.807 -22.533 84.781 1.00 38.23 C
ATOM 22 P U B2365 27.459 -23.461 79.402 1.00 36.73 P
ATOM 23 OP1 U B2365 28.183 -24.024 78.257 1.00 36.67 O
ATOM 24 OP2 U B2365 27.829 -22.122 79.911 1.00 36.65 O
ATOM 25 O5' U B2365 25.912 -23.490 79.102 1.00 36.80 O
TER
ATOM 2 P A A2556 19.533 -28.661 80.252 1.00 32.99 P
ATOM 3 OP1 A A2556 18.887 -29.831 80.918 1.00 33.23 O
ATOM 4 OP2 A A2556 19.797 -28.723 78.820 1.00 32.88 O
ATOM 5 O5' A A2556 18.675 -27.374 80.578 1.00 32.96 O
ATOM 6 C5' A A2556 18.992 -26.098 80.102 1.00 32.77 C
ATOM 7 C4' A A2556 17.958 -25.130 80.584 1.00 32.81 C
ATOM 8 O4' A A2556 18.030 -24.913 82.018 1.00 32.89 O
ATOM 9 C3' A A2556 18.000 -23.768 79.986 1.00 32.64 C
ATOM 10 O3' A A2556 17.466 -23.833 78.685 1.00 32.62 O
ATOM 11 C2' A A2556 17.151 -22.977 80.980 1.00 32.74 C
ATOM 12 O2' A A2556 15.820 -23.191 80.700 1.00 32.87 O
ATOM 13 C1' A A2556 17.444 -23.676 82.317 1.00 32.87 C
ATOM 14 N9 A A2556 18.363 -22.884 83.159 1.00 32.79 N
ATOM 15 C8 A A2556 19.732 -22.944 83.231 1.00 32.68 C
ATOM 16 N7 A A2556 20.300 -22.023 83.995 1.00 32.64 N
ATOM 17 C5 A A2556 19.231 -21.297 84.475 1.00 32.73 C
ATOM 18 C6 A A2556 19.151 -20.183 85.329 1.00 32.75 C
ATOM 19 N6 A A2556 20.205 -19.620 85.884 1.00 32.69 N
ATOM 20 N1 A A2556 17.923 -19.670 85.605 1.00 32.87 N
ATOM 21 C2 A A2556 16.868 -20.242 85.009 1.00 32.94 C
ATOM 22 N3 A A2556 16.834 -21.285 84.182 1.00 32.92 N
ATOM 23 C4 A A2556 18.038 -21.801 83.957 1.00 32.82 C
ATOM 24 P G A2557 17.498 -22.627 77.648 1.00 34.02 P
ATOM 25 OP1 G A2557 16.733 -23.085 76.494 1.00 34.08 O
ATOM 26 OP2 G A2557 18.913 -22.209 77.429 1.00 33.84 O
ATOM 27 O5' G A2557 16.717 -21.495 78.412 1.00 34.06 O
TER
ATOM 1 O3' U B2363 29.940 -22.981 86.006 1.00 37.23 O
ATOM 2 P U B2364 29.886 -22.024 84.725 1.00 37.99 P
ATOM 3 OP1 U B2364 31.277 -21.982 84.165 1.00 37.88 O
ATOM 4 OP2 U B2364 29.251 -20.770 85.144 1.00 37.98 O
ATOM 5 O5' U B2364 28.925 -22.800 83.736 1.00 37.98 O
ATOM 6 C5' U B2364 29.156 -24.148 83.424 1.00 38.05 C
ATOM 7 C4' U B2364 27.889 -24.825 83.004 1.00 38.13 C
ATOM 8 O4' U B2364 26.947 -24.815 84.096 1.00 38.28 O
ATOM 9 C3' U B2364 27.126 -24.167 81.874 1.00 38.01 C
ATOM 10 O3' U B2364 27.642 -24.491 80.611 1.00 37.90 O
ATOM 11 C2' U B2364 25.737 -24.698 82.081 1.00 38.15 C
ATOM 12 O2' U B2364 25.682 -26.045 81.683 1.00 38.25 O
ATOM 13 C1' U B2364 25.640 -24.681 83.584 1.00 38.29 C
ATOM 14 N1 U B2364 25.044 -23.439 84.098 1.00 38.28 N
ATOM 15 C2 U B2364 23.672 -23.319 83.943 1.00 38.34 C
ATOM 16 O2 U B2364 22.963 -24.152 83.362 1.00 38.40 O
ATOM 17 N3 U B2364 23.173 -22.174 84.479 1.00 38.34 N
ATOM 18 C4 U B2364 23.880 -21.246 85.150 1.00 38.30 C
ATOM 19 O4 U B2364 23.286 -20.286 85.591 1.00 38.33 O
ATOM 20 C5 U B2364 25.273 -21.465 85.299 1.00 38.24 C
ATOM 21 C6 U B2364 25.807 -22.533 84.781 1.00 38.23 C
ATOM 22 P U B2365 27.459 -23.461 79.402 1.00 36.73 P
ATOM 23 OP1 U B2365 28.183 -24.024 78.257 1.00 36.67 O
ATOM 24 OP2 U B2365 27.829 -22.122 79.911 1.00 36.65 O
ATOM 25 O5' U B2365 25.912 -23.490 79.102 1.00 36.80 O
TER
Atoms:
OP1: (18.887,-29.831,80.918)
OP2: (19.797,-28.723,78.820)
C3': (18.000,-23.768,79.986)
C1': (17.444,-23.676,82.317)
C5': (18.992,-26.098,80.102)
O4': (18.030,-24.913,82.018)
C8: (19.732,-22.944,83.231)
O2': (15.820,-23.191,80.700)
C6: (19.151,-20.183,85.329)
C5: (19.231,-21.297,84.475)
C4: (18.038,-21.801,83.957)
P: (19.533,-28.661,80.252)
C4': (17.958,-25.130,80.584)
C2': (17.151,-22.977,80.980)
C2: (16.868,-20.242,85.009)
N1: (17.923,-19.670,85.605)
N3: (16.834,-21.285,84.182)
N6: (20.205,-19.620,85.884)
N7: (20.300,-22.023,83.995)
N9: (18.363,-22.884,83.159)
O5': (18.675,-27.374,80.578)
O3': (17.466,-23.833,78.685)
OP2: (19.797,-28.723,78.820)
C3': (18.000,-23.768,79.986)
C1': (17.444,-23.676,82.317)
C5': (18.992,-26.098,80.102)
O4': (18.030,-24.913,82.018)
C8: (19.732,-22.944,83.231)
O2': (15.820,-23.191,80.700)
C6: (19.151,-20.183,85.329)
C5: (19.231,-21.297,84.475)
C4: (18.038,-21.801,83.957)
P: (19.533,-28.661,80.252)
C4': (17.958,-25.130,80.584)
C2': (17.151,-22.977,80.980)
C2: (16.868,-20.242,85.009)
N1: (17.923,-19.670,85.605)
N3: (16.834,-21.285,84.182)
N6: (20.205,-19.620,85.884)
N7: (20.300,-22.023,83.995)
N9: (18.363,-22.884,83.159)
O5': (18.675,-27.374,80.578)
O3': (17.466,-23.833,78.685)
C4: (23.880,-21.246,85.150)
N3: (23.173,-22.174,84.479)
OP1: (31.277,-21.982,84.165)
OP2: (29.251,-20.770,85.144)
C2: (23.672,-23.319,83.943)
C1': (25.640,-24.681,83.584)
C3': (27.126,-24.167,81.874)
O5': (28.925,-22.800,83.736)
O4': (26.947,-24.815,84.096)
C5': (29.156,-24.148,83.424)
P: (29.886,-22.024,84.725)
C4': (27.889,-24.825,83.004)
C2': (25.737,-24.698,82.081)
O2': (25.682,-26.045,81.683)
N1: (25.044,-23.439,84.098)
O4: (23.286,-20.286,85.591)
O2: (22.963,-24.152,83.362)
C6: (25.807,-22.533,84.781)
C5: (25.273,-21.465,85.299)
O3': (27.642,-24.491,80.611)
N3: (23.173,-22.174,84.479)
OP1: (31.277,-21.982,84.165)
OP2: (29.251,-20.770,85.144)
C2: (23.672,-23.319,83.943)
C1': (25.640,-24.681,83.584)
C3': (27.126,-24.167,81.874)
O5': (28.925,-22.800,83.736)
O4': (26.947,-24.815,84.096)
C5': (29.156,-24.148,83.424)
P: (29.886,-22.024,84.725)
C4': (27.889,-24.825,83.004)
C2': (25.737,-24.698,82.081)
O2': (25.682,-26.045,81.683)
N1: (25.044,-23.439,84.098)
O4: (23.286,-20.286,85.591)
O2: (22.963,-24.152,83.362)
C6: (25.807,-22.533,84.781)
C5: (25.273,-21.465,85.299)
O3': (27.642,-24.491,80.611)
Image (generated by PyMOL):