Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VBZ:B41:B61
Extra
PDB:
ATOM 1 O3' G A 40 47.451 69.159 76.422 1.00 82.01 O
ATOM 2 P C A 41 47.974 67.801 75.749 1.00 81.92 P
ATOM 3 OP1 C A 41 48.426 66.879 76.821 1.00 82.51 O
ATOM 4 OP2 C A 41 48.906 68.185 74.658 1.00 81.44 O
ATOM 5 O5' C A 41 46.669 67.184 75.085 1.00 80.70 O
ATOM 6 C5' C A 41 45.971 66.124 75.718 1.00 78.53 C
ATOM 7 C4' C A 41 44.927 66.678 76.654 1.00 76.53 C
ATOM 8 O4' C A 41 44.088 67.617 75.938 1.00 75.58 O
ATOM 9 C3' C A 41 43.999 65.636 77.259 1.00 75.92 C
ATOM 10 O3' C A 41 43.664 66.057 78.569 1.00 75.81 O
ATOM 11 C2' C A 41 42.759 65.728 76.379 1.00 74.61 C
ATOM 12 O2' C A 41 41.576 65.331 77.048 1.00 76.35 O
ATOM 13 C1' C A 41 42.740 67.218 76.045 1.00 72.47 C
ATOM 14 N1 C A 41 42.065 67.551 74.787 1.00 67.51 N
ATOM 15 C2 C A 41 40.700 67.784 74.819 1.00 64.99 C
ATOM 16 O2 C A 41 40.108 67.703 75.902 1.00 63.77 O
ATOM 17 N3 C A 41 40.056 68.093 73.676 1.00 63.03 N
ATOM 18 C4 C A 41 40.728 68.169 72.531 1.00 61.24 C
ATOM 19 N4 C A 41 40.040 68.467 71.428 1.00 59.30 N
ATOM 20 C5 C A 41 42.128 67.941 72.468 1.00 61.58 C
ATOM 21 C6 C A 41 42.754 67.635 73.610 1.00 64.31 C
ATOM 22 P A A 42 44.468 65.471 79.828 1.00 77.64 P
ATOM 23 OP1 A A 42 45.843 66.044 79.846 1.00 76.52 O
ATOM 24 OP2 A A 42 44.282 63.999 79.836 1.00 77.42 O
ATOM 25 O5' A A 42 43.656 66.054 81.064 1.00 77.13 O
TER
ATOM 1 O3' U B 60 38.779 68.285 65.124 1.00 58.11 O
ATOM 2 P G B 61 38.926 69.808 65.608 1.00 59.69 P
ATOM 3 OP1 G B 61 38.937 70.658 64.393 1.00 61.59 O
ATOM 4 OP2 G B 61 40.055 69.888 66.569 1.00 60.09 O
ATOM 5 O5' G B 61 37.575 70.097 66.391 1.00 57.68 O
ATOM 6 C5' G B 61 36.332 70.069 65.715 1.00 57.34 C
ATOM 7 C4' G B 61 35.197 70.215 66.703 1.00 58.07 C
ATOM 8 O4' G B 61 35.219 69.122 67.656 1.00 57.48 O
ATOM 9 C3' G B 61 35.197 71.466 67.564 1.00 57.48 C
ATOM 10 O3' G B 61 34.630 72.552 66.850 1.00 58.37 O
ATOM 11 C2' G B 61 34.347 71.044 68.759 1.00 56.26 C
ATOM 12 O2' G B 61 32.952 71.120 68.518 1.00 54.09 O
ATOM 13 C1' G B 61 34.725 69.573 68.900 1.00 55.17 C
ATOM 14 N9 G B 61 35.736 69.335 69.922 1.00 54.21 N
ATOM 15 C8 G B 61 37.067 69.029 69.741 1.00 54.77 C
ATOM 16 N7 G B 61 37.698 68.805 70.866 1.00 53.89 N
ATOM 17 C5 G B 61 36.726 68.993 71.847 1.00 53.27 C
ATOM 18 C6 G B 61 36.806 68.886 73.260 1.00 52.49 C
ATOM 19 O6 G B 61 37.785 68.596 73.957 1.00 52.45 O
ATOM 20 N1 G B 61 35.581 69.159 73.865 1.00 51.40 N
ATOM 21 C2 G B 61 34.429 69.498 73.199 1.00 51.24 C
ATOM 22 N2 G B 61 33.338 69.724 73.955 1.00 50.08 N
ATOM 23 N3 G B 61 34.344 69.607 71.887 1.00 52.39 N
ATOM 24 C4 G B 61 35.518 69.337 71.278 1.00 53.01 C
ATOM 25 P G B 62 35.281 74.009 66.978 1.00 58.27 P
ATOM 26 OP1 G B 62 34.930 74.774 65.752 1.00 59.25 O
ATOM 27 OP2 G B 62 36.698 73.824 67.339 1.00 57.13 O
ATOM 28 O5' G B 62 34.521 74.655 68.217 1.00 58.62 O
TER
ATOM 2 P C A 41 47.974 67.801 75.749 1.00 81.92 P
ATOM 3 OP1 C A 41 48.426 66.879 76.821 1.00 82.51 O
ATOM 4 OP2 C A 41 48.906 68.185 74.658 1.00 81.44 O
ATOM 5 O5' C A 41 46.669 67.184 75.085 1.00 80.70 O
ATOM 6 C5' C A 41 45.971 66.124 75.718 1.00 78.53 C
ATOM 7 C4' C A 41 44.927 66.678 76.654 1.00 76.53 C
ATOM 8 O4' C A 41 44.088 67.617 75.938 1.00 75.58 O
ATOM 9 C3' C A 41 43.999 65.636 77.259 1.00 75.92 C
ATOM 10 O3' C A 41 43.664 66.057 78.569 1.00 75.81 O
ATOM 11 C2' C A 41 42.759 65.728 76.379 1.00 74.61 C
ATOM 12 O2' C A 41 41.576 65.331 77.048 1.00 76.35 O
ATOM 13 C1' C A 41 42.740 67.218 76.045 1.00 72.47 C
ATOM 14 N1 C A 41 42.065 67.551 74.787 1.00 67.51 N
ATOM 15 C2 C A 41 40.700 67.784 74.819 1.00 64.99 C
ATOM 16 O2 C A 41 40.108 67.703 75.902 1.00 63.77 O
ATOM 17 N3 C A 41 40.056 68.093 73.676 1.00 63.03 N
ATOM 18 C4 C A 41 40.728 68.169 72.531 1.00 61.24 C
ATOM 19 N4 C A 41 40.040 68.467 71.428 1.00 59.30 N
ATOM 20 C5 C A 41 42.128 67.941 72.468 1.00 61.58 C
ATOM 21 C6 C A 41 42.754 67.635 73.610 1.00 64.31 C
ATOM 22 P A A 42 44.468 65.471 79.828 1.00 77.64 P
ATOM 23 OP1 A A 42 45.843 66.044 79.846 1.00 76.52 O
ATOM 24 OP2 A A 42 44.282 63.999 79.836 1.00 77.42 O
ATOM 25 O5' A A 42 43.656 66.054 81.064 1.00 77.13 O
TER
ATOM 1 O3' U B 60 38.779 68.285 65.124 1.00 58.11 O
ATOM 2 P G B 61 38.926 69.808 65.608 1.00 59.69 P
ATOM 3 OP1 G B 61 38.937 70.658 64.393 1.00 61.59 O
ATOM 4 OP2 G B 61 40.055 69.888 66.569 1.00 60.09 O
ATOM 5 O5' G B 61 37.575 70.097 66.391 1.00 57.68 O
ATOM 6 C5' G B 61 36.332 70.069 65.715 1.00 57.34 C
ATOM 7 C4' G B 61 35.197 70.215 66.703 1.00 58.07 C
ATOM 8 O4' G B 61 35.219 69.122 67.656 1.00 57.48 O
ATOM 9 C3' G B 61 35.197 71.466 67.564 1.00 57.48 C
ATOM 10 O3' G B 61 34.630 72.552 66.850 1.00 58.37 O
ATOM 11 C2' G B 61 34.347 71.044 68.759 1.00 56.26 C
ATOM 12 O2' G B 61 32.952 71.120 68.518 1.00 54.09 O
ATOM 13 C1' G B 61 34.725 69.573 68.900 1.00 55.17 C
ATOM 14 N9 G B 61 35.736 69.335 69.922 1.00 54.21 N
ATOM 15 C8 G B 61 37.067 69.029 69.741 1.00 54.77 C
ATOM 16 N7 G B 61 37.698 68.805 70.866 1.00 53.89 N
ATOM 17 C5 G B 61 36.726 68.993 71.847 1.00 53.27 C
ATOM 18 C6 G B 61 36.806 68.886 73.260 1.00 52.49 C
ATOM 19 O6 G B 61 37.785 68.596 73.957 1.00 52.45 O
ATOM 20 N1 G B 61 35.581 69.159 73.865 1.00 51.40 N
ATOM 21 C2 G B 61 34.429 69.498 73.199 1.00 51.24 C
ATOM 22 N2 G B 61 33.338 69.724 73.955 1.00 50.08 N
ATOM 23 N3 G B 61 34.344 69.607 71.887 1.00 52.39 N
ATOM 24 C4 G B 61 35.518 69.337 71.278 1.00 53.01 C
ATOM 25 P G B 62 35.281 74.009 66.978 1.00 58.27 P
ATOM 26 OP1 G B 62 34.930 74.774 65.752 1.00 59.25 O
ATOM 27 OP2 G B 62 36.698 73.824 67.339 1.00 57.13 O
ATOM 28 O5' G B 62 34.521 74.655 68.217 1.00 58.62 O
TER
Atoms:
C2: (40.700,67.784,74.819)
OP1: (48.426,66.879,76.821)
OP2: (48.906,68.185,74.658)
C4: (40.728,68.169,72.531)
O5': (46.669,67.184,75.085)
C3': (43.999,65.636,77.259)
C1': (42.740,67.218,76.045)
O4': (44.088,67.617,75.938)
C5': (45.971,66.124,75.718)
P: (47.974,67.801,75.749)
O2: (40.108,67.703,75.902)
C4': (44.927,66.678,76.654)
C2': (42.759,65.728,76.379)
O2': (41.576,65.331,77.048)
N1: (42.065,67.551,74.787)
N3: (40.056,68.093,73.676)
N4: (40.040,68.467,71.428)
C6: (42.754,67.635,73.610)
C5: (42.128,67.941,72.468)
O3': (43.664,66.057,78.569)
OP1: (48.426,66.879,76.821)
OP2: (48.906,68.185,74.658)
C4: (40.728,68.169,72.531)
O5': (46.669,67.184,75.085)
C3': (43.999,65.636,77.259)
C1': (42.740,67.218,76.045)
O4': (44.088,67.617,75.938)
C5': (45.971,66.124,75.718)
P: (47.974,67.801,75.749)
O2: (40.108,67.703,75.902)
C4': (44.927,66.678,76.654)
C2': (42.759,65.728,76.379)
O2': (41.576,65.331,77.048)
N1: (42.065,67.551,74.787)
N3: (40.056,68.093,73.676)
N4: (40.040,68.467,71.428)
C6: (42.754,67.635,73.610)
C5: (42.128,67.941,72.468)
O3': (43.664,66.057,78.569)
OP1: (38.937,70.658,64.393)
OP2: (40.055,69.888,66.569)
C3': (35.197,71.466,67.564)
C1': (34.725,69.573,68.900)
C5': (36.332,70.069,65.715)
O6: (37.785,68.596,73.957)
O4': (35.219,69.122,67.656)
C8: (37.067,69.029,69.741)
C2: (34.429,69.498,73.199)
C6: (36.806,68.886,73.260)
C5: (36.726,68.993,71.847)
C4: (35.518,69.337,71.278)
P: (38.926,69.808,65.608)
C4': (35.197,70.215,66.703)
C2': (34.347,71.044,68.759)
O2': (32.952,71.120,68.518)
N1: (35.581,69.159,73.865)
N2: (33.338,69.724,73.955)
N3: (34.344,69.607,71.887)
N7: (37.698,68.805,70.866)
N9: (35.736,69.335,69.922)
O5': (37.575,70.097,66.391)
O3': (34.630,72.552,66.850)
OP2: (40.055,69.888,66.569)
C3': (35.197,71.466,67.564)
C1': (34.725,69.573,68.900)
C5': (36.332,70.069,65.715)
O6: (37.785,68.596,73.957)
O4': (35.219,69.122,67.656)
C8: (37.067,69.029,69.741)
C2: (34.429,69.498,73.199)
C6: (36.806,68.886,73.260)
C5: (36.726,68.993,71.847)
C4: (35.518,69.337,71.278)
P: (38.926,69.808,65.608)
C4': (35.197,70.215,66.703)
C2': (34.347,71.044,68.759)
O2': (32.952,71.120,68.518)
N1: (35.581,69.159,73.865)
N2: (33.338,69.724,73.955)
N3: (34.344,69.607,71.887)
N7: (37.698,68.805,70.866)
N9: (35.736,69.335,69.922)
O5': (37.575,70.097,66.391)
O3': (34.630,72.552,66.850)
Image (generated by PyMOL):