Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1D4R:A23:B4
Extra
PDB:
ATOM 1 O3' A A 22 35.468 -12.084 -32.507 1.00 43.87 O
ATOM 2 P C A 23 34.951 -12.499 -33.976 1.00 48.80 P
ATOM 3 OP1 C A 23 36.148 -12.640 -34.838 1.00 45.80 O
ATOM 4 OP2 C A 23 33.856 -11.595 -34.407 1.00 46.12 O
ATOM 5 O5' C A 23 34.346 -13.952 -33.751 1.00 42.08 O
ATOM 6 C5' C A 23 35.208 -15.055 -33.461 1.00 47.20 C
ATOM 7 C4' C A 23 34.410 -16.244 -32.984 1.00 43.07 C
ATOM 8 O4' C A 23 33.687 -15.929 -31.757 1.00 45.08 O
ATOM 9 C3' C A 23 33.336 -16.742 -33.932 1.00 43.53 C
ATOM 10 O3' C A 23 33.894 -17.561 -34.962 1.00 43.89 O
ATOM 11 C2' C A 23 32.436 -17.519 -32.982 1.00 46.06 C
ATOM 12 O2' C A 23 32.985 -18.765 -32.610 1.00 46.60 O
ATOM 13 C1' C A 23 32.428 -16.595 -31.763 1.00 49.26 C
ATOM 14 N1 C A 23 31.323 -15.600 -31.775 1.00 46.85 N
ATOM 15 C2 C A 23 30.059 -15.998 -31.317 1.00 53.53 C
ATOM 16 O2 C A 23 29.911 -17.157 -30.892 1.00 49.70 O
ATOM 17 N3 C A 23 29.029 -15.111 -31.348 1.00 47.16 N
ATOM 18 C4 C A 23 29.231 -13.867 -31.799 1.00 54.62 C
ATOM 19 N4 C A 23 28.194 -13.013 -31.803 1.00 38.79 N
ATOM 20 C5 C A 23 30.504 -13.437 -32.262 1.00 45.23 C
ATOM 21 C6 C A 23 31.514 -14.326 -32.232 1.00 50.44 C
ATOM 22 P C A 24 33.149 -17.668 -36.384 1.00 50.63 P
ATOM 23 OP1 C A 24 34.151 -17.916 -37.446 1.00 49.18 O
ATOM 24 OP2 C A 24 32.232 -16.506 -36.515 1.00 53.57 O
ATOM 25 O5' C A 24 32.237 -18.972 -36.250 1.00 49.77 O
TER
ATOM 1 O3' G B 3 17.803 -20.399 -28.266 1.00 68.38 O
ATOM 2 P A B 4 18.681 -20.450 -26.925 1.00 73.01 P
ATOM 3 OP1 A B 4 18.155 -21.566 -26.097 1.00 74.93 O
ATOM 4 OP2 A B 4 18.769 -19.083 -26.346 1.00 74.67 O
ATOM 5 O5' A B 4 20.124 -20.870 -27.451 1.00 69.90 O
ATOM 6 C5' A B 4 21.220 -20.995 -26.566 1.00 61.66 C
ATOM 7 C4' A B 4 22.283 -21.849 -27.198 1.00 60.70 C
ATOM 8 O4' A B 4 22.440 -21.468 -28.592 1.00 63.08 O
ATOM 9 C3' A B 4 23.659 -21.701 -26.576 1.00 59.48 C
ATOM 10 O3' A B 4 23.806 -22.631 -25.516 1.00 58.86 O
ATOM 11 C2' A B 4 24.588 -21.999 -27.741 1.00 59.06 C
ATOM 12 O2' A B 4 24.774 -23.377 -27.962 1.00 63.20 O
ATOM 13 C1' A B 4 23.819 -21.381 -28.912 1.00 61.31 C
ATOM 14 N9 A B 4 24.161 -19.979 -29.180 1.00 58.16 N
ATOM 15 C8 A B 4 23.332 -18.884 -29.158 1.00 55.58 C
ATOM 16 N7 A B 4 23.935 -17.756 -29.445 1.00 49.89 N
ATOM 17 C5 A B 4 25.251 -18.130 -29.673 1.00 54.59 C
ATOM 18 C6 A B 4 26.400 -17.389 -30.029 1.00 52.14 C
ATOM 19 N6 A B 4 26.402 -16.066 -30.214 1.00 46.88 N
ATOM 20 N1 A B 4 27.559 -18.065 -30.189 1.00 48.02 N
ATOM 21 C2 A B 4 27.557 -19.395 -30.001 1.00 54.59 C
ATOM 22 N3 A B 4 26.546 -20.199 -29.662 1.00 54.92 N
ATOM 23 C4 A B 4 25.407 -19.496 -29.514 1.00 53.70 C
ATOM 24 P C B 5 24.101 -22.092 -24.033 1.00 65.56 P
ATOM 25 OP1 C B 5 23.810 -23.190 -23.075 1.00 67.64 O
ATOM 26 OP2 C B 5 23.427 -20.778 -23.870 1.00 58.29 O
ATOM 27 O5' C B 5 25.675 -21.848 -24.026 1.00 59.35 O
TER
ATOM 2 P C A 23 34.951 -12.499 -33.976 1.00 48.80 P
ATOM 3 OP1 C A 23 36.148 -12.640 -34.838 1.00 45.80 O
ATOM 4 OP2 C A 23 33.856 -11.595 -34.407 1.00 46.12 O
ATOM 5 O5' C A 23 34.346 -13.952 -33.751 1.00 42.08 O
ATOM 6 C5' C A 23 35.208 -15.055 -33.461 1.00 47.20 C
ATOM 7 C4' C A 23 34.410 -16.244 -32.984 1.00 43.07 C
ATOM 8 O4' C A 23 33.687 -15.929 -31.757 1.00 45.08 O
ATOM 9 C3' C A 23 33.336 -16.742 -33.932 1.00 43.53 C
ATOM 10 O3' C A 23 33.894 -17.561 -34.962 1.00 43.89 O
ATOM 11 C2' C A 23 32.436 -17.519 -32.982 1.00 46.06 C
ATOM 12 O2' C A 23 32.985 -18.765 -32.610 1.00 46.60 O
ATOM 13 C1' C A 23 32.428 -16.595 -31.763 1.00 49.26 C
ATOM 14 N1 C A 23 31.323 -15.600 -31.775 1.00 46.85 N
ATOM 15 C2 C A 23 30.059 -15.998 -31.317 1.00 53.53 C
ATOM 16 O2 C A 23 29.911 -17.157 -30.892 1.00 49.70 O
ATOM 17 N3 C A 23 29.029 -15.111 -31.348 1.00 47.16 N
ATOM 18 C4 C A 23 29.231 -13.867 -31.799 1.00 54.62 C
ATOM 19 N4 C A 23 28.194 -13.013 -31.803 1.00 38.79 N
ATOM 20 C5 C A 23 30.504 -13.437 -32.262 1.00 45.23 C
ATOM 21 C6 C A 23 31.514 -14.326 -32.232 1.00 50.44 C
ATOM 22 P C A 24 33.149 -17.668 -36.384 1.00 50.63 P
ATOM 23 OP1 C A 24 34.151 -17.916 -37.446 1.00 49.18 O
ATOM 24 OP2 C A 24 32.232 -16.506 -36.515 1.00 53.57 O
ATOM 25 O5' C A 24 32.237 -18.972 -36.250 1.00 49.77 O
TER
ATOM 1 O3' G B 3 17.803 -20.399 -28.266 1.00 68.38 O
ATOM 2 P A B 4 18.681 -20.450 -26.925 1.00 73.01 P
ATOM 3 OP1 A B 4 18.155 -21.566 -26.097 1.00 74.93 O
ATOM 4 OP2 A B 4 18.769 -19.083 -26.346 1.00 74.67 O
ATOM 5 O5' A B 4 20.124 -20.870 -27.451 1.00 69.90 O
ATOM 6 C5' A B 4 21.220 -20.995 -26.566 1.00 61.66 C
ATOM 7 C4' A B 4 22.283 -21.849 -27.198 1.00 60.70 C
ATOM 8 O4' A B 4 22.440 -21.468 -28.592 1.00 63.08 O
ATOM 9 C3' A B 4 23.659 -21.701 -26.576 1.00 59.48 C
ATOM 10 O3' A B 4 23.806 -22.631 -25.516 1.00 58.86 O
ATOM 11 C2' A B 4 24.588 -21.999 -27.741 1.00 59.06 C
ATOM 12 O2' A B 4 24.774 -23.377 -27.962 1.00 63.20 O
ATOM 13 C1' A B 4 23.819 -21.381 -28.912 1.00 61.31 C
ATOM 14 N9 A B 4 24.161 -19.979 -29.180 1.00 58.16 N
ATOM 15 C8 A B 4 23.332 -18.884 -29.158 1.00 55.58 C
ATOM 16 N7 A B 4 23.935 -17.756 -29.445 1.00 49.89 N
ATOM 17 C5 A B 4 25.251 -18.130 -29.673 1.00 54.59 C
ATOM 18 C6 A B 4 26.400 -17.389 -30.029 1.00 52.14 C
ATOM 19 N6 A B 4 26.402 -16.066 -30.214 1.00 46.88 N
ATOM 20 N1 A B 4 27.559 -18.065 -30.189 1.00 48.02 N
ATOM 21 C2 A B 4 27.557 -19.395 -30.001 1.00 54.59 C
ATOM 22 N3 A B 4 26.546 -20.199 -29.662 1.00 54.92 N
ATOM 23 C4 A B 4 25.407 -19.496 -29.514 1.00 53.70 C
ATOM 24 P C B 5 24.101 -22.092 -24.033 1.00 65.56 P
ATOM 25 OP1 C B 5 23.810 -23.190 -23.075 1.00 67.64 O
ATOM 26 OP2 C B 5 23.427 -20.778 -23.870 1.00 58.29 O
ATOM 27 O5' C B 5 25.675 -21.848 -24.026 1.00 59.35 O
TER
Atoms:
C2: (30.059,-15.998,-31.317)
OP1: (36.148,-12.640,-34.838)
OP2: (33.856,-11.595,-34.407)
C4: (29.231,-13.867,-31.799)
O5': (34.346,-13.952,-33.751)
C3': (33.336,-16.742,-33.932)
C1': (32.428,-16.595,-31.763)
O4': (33.687,-15.929,-31.757)
C5': (35.208,-15.055,-33.461)
P: (34.951,-12.499,-33.976)
O2: (29.911,-17.157,-30.892)
C4': (34.410,-16.244,-32.984)
C2': (32.436,-17.519,-32.982)
O2': (32.985,-18.765,-32.610)
N1: (31.323,-15.600,-31.775)
N3: (29.029,-15.111,-31.348)
N4: (28.194,-13.013,-31.803)
C6: (31.514,-14.326,-32.232)
C5: (30.504,-13.437,-32.262)
O3': (33.894,-17.561,-34.962)
OP1: (36.148,-12.640,-34.838)
OP2: (33.856,-11.595,-34.407)
C4: (29.231,-13.867,-31.799)
O5': (34.346,-13.952,-33.751)
C3': (33.336,-16.742,-33.932)
C1': (32.428,-16.595,-31.763)
O4': (33.687,-15.929,-31.757)
C5': (35.208,-15.055,-33.461)
P: (34.951,-12.499,-33.976)
O2: (29.911,-17.157,-30.892)
C4': (34.410,-16.244,-32.984)
C2': (32.436,-17.519,-32.982)
O2': (32.985,-18.765,-32.610)
N1: (31.323,-15.600,-31.775)
N3: (29.029,-15.111,-31.348)
N4: (28.194,-13.013,-31.803)
C6: (31.514,-14.326,-32.232)
C5: (30.504,-13.437,-32.262)
O3': (33.894,-17.561,-34.962)
OP1: (18.155,-21.566,-26.097)
OP2: (18.769,-19.083,-26.346)
C3': (23.659,-21.701,-26.576)
C1': (23.819,-21.381,-28.912)
C5': (21.220,-20.995,-26.566)
O4': (22.440,-21.468,-28.592)
C8: (23.332,-18.884,-29.158)
O2': (24.774,-23.377,-27.962)
C6: (26.400,-17.389,-30.029)
C5: (25.251,-18.130,-29.673)
C4: (25.407,-19.496,-29.514)
P: (18.681,-20.450,-26.925)
C4': (22.283,-21.849,-27.198)
C2': (24.588,-21.999,-27.741)
C2: (27.557,-19.395,-30.001)
N1: (27.559,-18.065,-30.189)
N3: (26.546,-20.199,-29.662)
N6: (26.402,-16.066,-30.214)
N7: (23.935,-17.756,-29.445)
N9: (24.161,-19.979,-29.180)
O5': (20.124,-20.870,-27.451)
O3': (23.806,-22.631,-25.516)
OP2: (18.769,-19.083,-26.346)
C3': (23.659,-21.701,-26.576)
C1': (23.819,-21.381,-28.912)
C5': (21.220,-20.995,-26.566)
O4': (22.440,-21.468,-28.592)
C8: (23.332,-18.884,-29.158)
O2': (24.774,-23.377,-27.962)
C6: (26.400,-17.389,-30.029)
C5: (25.251,-18.130,-29.673)
C4: (25.407,-19.496,-29.514)
P: (18.681,-20.450,-26.925)
C4': (22.283,-21.849,-27.198)
C2': (24.588,-21.999,-27.741)
C2: (27.557,-19.395,-30.001)
N1: (27.559,-18.065,-30.189)
N3: (26.546,-20.199,-29.662)
N6: (26.402,-16.066,-30.214)
N7: (23.935,-17.756,-29.445)
N9: (24.161,-19.979,-29.180)
O5': (20.124,-20.870,-27.451)
O3': (23.806,-22.631,-25.516)
Image (generated by PyMOL):