Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12577:12616
Extra
PDB:
ATOM 1 O3' G A2576 32.477 0.462 41.817 1.00 42.54 O
ATOM 2 P C A2577 31.372 0.077 40.768 1.00 46.53 P
ATOM 3 OP1 C A2577 31.832 0.600 39.482 1.00 46.73 O
ATOM 4 OP2 C A2577 30.050 0.542 41.306 1.00 46.57 O
ATOM 5 O5' C A2577 31.424 -1.500 40.768 1.00 46.45 O
ATOM 6 C5' C A2577 32.488 -2.192 40.159 1.00 46.45 C
ATOM 7 C4' C A2577 32.266 -3.682 40.197 1.00 46.41 C
ATOM 8 O4' C A2577 32.262 -4.136 41.569 1.00 46.18 O
ATOM 9 C3' C A2577 30.945 -4.174 39.649 1.00 46.59 C
ATOM 10 O3' C A2577 30.952 -4.312 38.257 1.00 46.83 O
ATOM 11 C2' C A2577 30.744 -5.484 40.378 1.00 46.45 C
ATOM 12 O2' C A2577 31.553 -6.477 39.813 1.00 46.48 O
ATOM 13 C1' C A2577 31.316 -5.167 41.738 1.00 46.20 C
ATOM 14 N1 C A2577 30.291 -4.720 42.673 1.00 46.14 N
ATOM 15 C2 C A2577 29.456 -5.686 43.197 1.00 46.10 C
ATOM 16 O2 C A2577 29.593 -6.917 42.872 1.00 46.13 O
ATOM 17 N3 C A2577 28.496 -5.252 44.060 1.00 46.06 N
ATOM 18 C4 C A2577 28.375 -3.996 44.416 1.00 46.05 C
ATOM 19 N4 C A2577 27.405 -3.704 45.277 1.00 46.02 N
ATOM 20 C5 C A2577 29.247 -3.011 43.889 1.00 46.08 C
ATOM 21 C6 C A2577 30.177 -3.422 43.035 1.00 46.12 C
ATOM 22 P U A2578 29.698 -3.780 37.411 1.00 40.53 P
ATOM 23 OP1 U A2578 30.018 -3.945 35.970 1.00 40.77 O
ATOM 24 OP2 U A2578 29.398 -2.450 37.901 1.00 40.50 O
ATOM 25 O5' U A2578 28.547 -4.791 37.818 1.00 40.53 O
TER
ATOM 1 O3' G B2615 17.978 -9.228 49.399 1.00 49.18 O
ATOM 2 P A B2616 19.202 -9.790 50.250 1.00 47.25 P
ATOM 3 OP1 A B2616 18.774 -11.095 50.859 1.00 47.24 O
ATOM 4 OP2 A B2616 19.688 -8.686 51.141 1.00 47.09 O
ATOM 5 O5' A B2616 20.246 -10.097 49.116 1.00 47.26 O
ATOM 6 C5' A B2616 20.006 -11.177 48.239 1.00 47.41 C
ATOM 7 C4' A B2616 21.179 -11.421 47.373 1.00 47.39 C
ATOM 8 O4' A B2616 21.234 -10.402 46.362 1.00 47.51 O
ATOM 9 C3' A B2616 22.523 -11.345 48.055 1.00 47.16 C
ATOM 10 O3' A B2616 22.849 -12.559 48.732 1.00 47.06 O
ATOM 11 C2' A B2616 23.415 -11.055 46.870 1.00 47.22 C
ATOM 12 O2' A B2616 23.553 -12.232 46.082 1.00 47.33 O
ATOM 13 C1' A B2616 22.546 -10.061 46.096 1.00 47.40 C
ATOM 14 N9 A B2616 22.737 -8.677 46.558 1.00 47.31 N
ATOM 15 C8 A B2616 21.959 -7.969 47.459 1.00 47.28 C
ATOM 16 N7 A B2616 22.398 -6.741 47.721 1.00 47.21 N
ATOM 17 C5 A B2616 23.523 -6.628 46.930 1.00 47.19 C
ATOM 18 C6 A B2616 24.438 -5.596 46.749 1.00 47.14 C
ATOM 19 N6 A B2616 24.372 -4.428 47.365 1.00 47.10 N
ATOM 20 N1 A B2616 25.466 -5.809 45.901 1.00 47.15 N
ATOM 21 C2 A B2616 25.537 -6.992 45.278 1.00 47.22 C
ATOM 22 N3 A B2616 24.742 -8.055 45.369 1.00 47.27 N
ATOM 23 C4 A B2616 23.742 -7.806 46.215 1.00 47.26 C
ATOM 24 P U B2617 23.796 -12.586 50.037 1.00 47.35 P
ATOM 25 OP1 U B2617 23.952 -13.988 50.425 1.00 47.33 O
ATOM 26 OP2 U B2617 23.232 -11.651 51.012 1.00 47.28 O
ATOM 27 O5' U B2617 25.166 -12.025 49.501 1.00 47.27 O
TER
ATOM 2 P C A2577 31.372 0.077 40.768 1.00 46.53 P
ATOM 3 OP1 C A2577 31.832 0.600 39.482 1.00 46.73 O
ATOM 4 OP2 C A2577 30.050 0.542 41.306 1.00 46.57 O
ATOM 5 O5' C A2577 31.424 -1.500 40.768 1.00 46.45 O
ATOM 6 C5' C A2577 32.488 -2.192 40.159 1.00 46.45 C
ATOM 7 C4' C A2577 32.266 -3.682 40.197 1.00 46.41 C
ATOM 8 O4' C A2577 32.262 -4.136 41.569 1.00 46.18 O
ATOM 9 C3' C A2577 30.945 -4.174 39.649 1.00 46.59 C
ATOM 10 O3' C A2577 30.952 -4.312 38.257 1.00 46.83 O
ATOM 11 C2' C A2577 30.744 -5.484 40.378 1.00 46.45 C
ATOM 12 O2' C A2577 31.553 -6.477 39.813 1.00 46.48 O
ATOM 13 C1' C A2577 31.316 -5.167 41.738 1.00 46.20 C
ATOM 14 N1 C A2577 30.291 -4.720 42.673 1.00 46.14 N
ATOM 15 C2 C A2577 29.456 -5.686 43.197 1.00 46.10 C
ATOM 16 O2 C A2577 29.593 -6.917 42.872 1.00 46.13 O
ATOM 17 N3 C A2577 28.496 -5.252 44.060 1.00 46.06 N
ATOM 18 C4 C A2577 28.375 -3.996 44.416 1.00 46.05 C
ATOM 19 N4 C A2577 27.405 -3.704 45.277 1.00 46.02 N
ATOM 20 C5 C A2577 29.247 -3.011 43.889 1.00 46.08 C
ATOM 21 C6 C A2577 30.177 -3.422 43.035 1.00 46.12 C
ATOM 22 P U A2578 29.698 -3.780 37.411 1.00 40.53 P
ATOM 23 OP1 U A2578 30.018 -3.945 35.970 1.00 40.77 O
ATOM 24 OP2 U A2578 29.398 -2.450 37.901 1.00 40.50 O
ATOM 25 O5' U A2578 28.547 -4.791 37.818 1.00 40.53 O
TER
ATOM 1 O3' G B2615 17.978 -9.228 49.399 1.00 49.18 O
ATOM 2 P A B2616 19.202 -9.790 50.250 1.00 47.25 P
ATOM 3 OP1 A B2616 18.774 -11.095 50.859 1.00 47.24 O
ATOM 4 OP2 A B2616 19.688 -8.686 51.141 1.00 47.09 O
ATOM 5 O5' A B2616 20.246 -10.097 49.116 1.00 47.26 O
ATOM 6 C5' A B2616 20.006 -11.177 48.239 1.00 47.41 C
ATOM 7 C4' A B2616 21.179 -11.421 47.373 1.00 47.39 C
ATOM 8 O4' A B2616 21.234 -10.402 46.362 1.00 47.51 O
ATOM 9 C3' A B2616 22.523 -11.345 48.055 1.00 47.16 C
ATOM 10 O3' A B2616 22.849 -12.559 48.732 1.00 47.06 O
ATOM 11 C2' A B2616 23.415 -11.055 46.870 1.00 47.22 C
ATOM 12 O2' A B2616 23.553 -12.232 46.082 1.00 47.33 O
ATOM 13 C1' A B2616 22.546 -10.061 46.096 1.00 47.40 C
ATOM 14 N9 A B2616 22.737 -8.677 46.558 1.00 47.31 N
ATOM 15 C8 A B2616 21.959 -7.969 47.459 1.00 47.28 C
ATOM 16 N7 A B2616 22.398 -6.741 47.721 1.00 47.21 N
ATOM 17 C5 A B2616 23.523 -6.628 46.930 1.00 47.19 C
ATOM 18 C6 A B2616 24.438 -5.596 46.749 1.00 47.14 C
ATOM 19 N6 A B2616 24.372 -4.428 47.365 1.00 47.10 N
ATOM 20 N1 A B2616 25.466 -5.809 45.901 1.00 47.15 N
ATOM 21 C2 A B2616 25.537 -6.992 45.278 1.00 47.22 C
ATOM 22 N3 A B2616 24.742 -8.055 45.369 1.00 47.27 N
ATOM 23 C4 A B2616 23.742 -7.806 46.215 1.00 47.26 C
ATOM 24 P U B2617 23.796 -12.586 50.037 1.00 47.35 P
ATOM 25 OP1 U B2617 23.952 -13.988 50.425 1.00 47.33 O
ATOM 26 OP2 U B2617 23.232 -11.651 51.012 1.00 47.28 O
ATOM 27 O5' U B2617 25.166 -12.025 49.501 1.00 47.27 O
TER
Atoms:
C2: (29.456,-5.686,43.197)
OP1: (31.832,0.600,39.482)
OP2: (30.050,0.542,41.306)
C4: (28.375,-3.996,44.416)
O5': (31.424,-1.500,40.768)
C3': (30.945,-4.174,39.649)
C1': (31.316,-5.167,41.738)
O4': (32.262,-4.136,41.569)
C5': (32.488,-2.192,40.159)
P: (31.372,0.077,40.768)
O2: (29.593,-6.917,42.872)
C4': (32.266,-3.682,40.197)
C2': (30.744,-5.484,40.378)
O2': (31.553,-6.477,39.813)
N1: (30.291,-4.720,42.673)
N3: (28.496,-5.252,44.060)
N4: (27.405,-3.704,45.277)
C6: (30.177,-3.422,43.035)
C5: (29.247,-3.011,43.889)
O3': (30.952,-4.312,38.257)
OP1: (31.832,0.600,39.482)
OP2: (30.050,0.542,41.306)
C4: (28.375,-3.996,44.416)
O5': (31.424,-1.500,40.768)
C3': (30.945,-4.174,39.649)
C1': (31.316,-5.167,41.738)
O4': (32.262,-4.136,41.569)
C5': (32.488,-2.192,40.159)
P: (31.372,0.077,40.768)
O2: (29.593,-6.917,42.872)
C4': (32.266,-3.682,40.197)
C2': (30.744,-5.484,40.378)
O2': (31.553,-6.477,39.813)
N1: (30.291,-4.720,42.673)
N3: (28.496,-5.252,44.060)
N4: (27.405,-3.704,45.277)
C6: (30.177,-3.422,43.035)
C5: (29.247,-3.011,43.889)
O3': (30.952,-4.312,38.257)
OP1: (18.774,-11.095,50.859)
OP2: (19.688,-8.686,51.141)
C3': (22.523,-11.345,48.055)
C1': (22.546,-10.061,46.096)
C5': (20.006,-11.177,48.239)
O4': (21.234,-10.402,46.362)
C8: (21.959,-7.969,47.459)
O2': (23.553,-12.232,46.082)
C6: (24.438,-5.596,46.749)
C5: (23.523,-6.628,46.930)
C4: (23.742,-7.806,46.215)
P: (19.202,-9.790,50.250)
C4': (21.179,-11.421,47.373)
C2': (23.415,-11.055,46.870)
C2: (25.537,-6.992,45.278)
N1: (25.466,-5.809,45.901)
N3: (24.742,-8.055,45.369)
N6: (24.372,-4.428,47.365)
N7: (22.398,-6.741,47.721)
N9: (22.737,-8.677,46.558)
O5': (20.246,-10.097,49.116)
O3': (22.849,-12.559,48.732)
OP2: (19.688,-8.686,51.141)
C3': (22.523,-11.345,48.055)
C1': (22.546,-10.061,46.096)
C5': (20.006,-11.177,48.239)
O4': (21.234,-10.402,46.362)
C8: (21.959,-7.969,47.459)
O2': (23.553,-12.232,46.082)
C6: (24.438,-5.596,46.749)
C5: (23.523,-6.628,46.930)
C4: (23.742,-7.806,46.215)
P: (19.202,-9.790,50.250)
C4': (21.179,-11.421,47.373)
C2': (23.415,-11.055,46.870)
C2: (25.537,-6.992,45.278)
N1: (25.466,-5.809,45.901)
N3: (24.742,-8.055,45.369)
N6: (24.372,-4.428,47.365)
N7: (22.398,-6.741,47.721)
N9: (22.737,-8.677,46.558)
O5': (20.246,-10.097,49.116)
O3': (22.849,-12.559,48.732)
Image (generated by PyMOL):