Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1JID:B5:B22
Extra
PDB:
ATOM 1 O3' A A 4 24.382 16.564 17.912 1.00 17.49 O
ATOM 2 P C A 5 23.631 16.718 19.323 1.00 19.02 P
ATOM 3 OP1 C A 5 24.370 17.839 19.952 1.00 18.77 O
ATOM 4 OP2 C A 5 23.420 15.425 20.029 1.00 17.93 O
ATOM 5 O5' C A 5 22.142 17.192 18.942 1.00 19.20 O
ATOM 6 C5' C A 5 21.886 18.464 18.336 1.00 19.90 C
ATOM 7 C4' C A 5 20.464 18.500 17.810 1.00 20.15 C
ATOM 8 O4' C A 5 20.306 17.602 16.662 1.00 21.19 O
ATOM 9 C3' C A 5 19.369 18.068 18.763 1.00 18.50 C
ATOM 10 O3' C A 5 19.044 19.097 19.708 1.00 19.56 O
ATOM 11 C2' C A 5 18.234 17.761 17.779 1.00 21.47 C
ATOM 12 O2' C A 5 17.748 18.963 17.185 1.00 21.80 O
ATOM 13 C1' C A 5 19.008 17.008 16.685 1.00 20.96 C
ATOM 14 N1 C A 5 19.112 15.556 16.909 1.00 22.05 N
ATOM 15 C2 C A 5 18.073 14.731 16.471 1.00 22.16 C
ATOM 16 O2 C A 5 17.083 15.255 15.929 1.00 24.25 O
ATOM 17 N3 C A 5 18.156 13.398 16.653 1.00 24.32 N
ATOM 18 C4 C A 5 19.228 12.871 17.270 1.00 25.29 C
ATOM 19 N4 C A 5 19.295 11.537 17.408 1.00 23.08 N
ATOM 20 C5 C A 5 20.289 13.692 17.763 1.00 23.04 C
ATOM 21 C6 C A 5 20.196 15.014 17.552 1.00 23.47 C
ATOM 22 P C A 6 18.322 18.705 21.091 1.00 19.01 P
ATOM 23 OP1 C A 6 18.327 19.905 21.923 1.00 18.90 O
ATOM 24 OP2 C A 6 18.943 17.427 21.623 1.00 19.27 O
ATOM 25 O5' C A 6 16.830 18.340 20.684 1.00 21.28 O
TER
ATOM 1 O3' G B 21 7.619 7.267 13.376 1.00 42.11 O
ATOM 2 P A B 22 8.343 7.820 12.046 1.00 43.32 P
ATOM 3 OP1 A B 22 7.524 7.391 10.880 1.00 45.13 O
ATOM 4 OP2 A B 22 9.820 7.603 12.036 1.00 41.65 O
ATOM 5 O5' A B 22 8.097 9.361 12.191 1.00 40.29 O
ATOM 6 C5' A B 22 9.176 10.194 12.228 1.00 37.08 C
ATOM 7 C4' A B 22 8.737 11.545 12.605 1.00 33.47 C
ATOM 8 O4' A B 22 9.103 11.721 13.999 1.00 31.04 O
ATOM 9 C3' A B 22 9.578 12.512 11.797 1.00 33.09 C
ATOM 10 O3' A B 22 8.856 13.038 10.695 1.00 34.09 O
ATOM 11 C2' A B 22 10.008 13.556 12.806 1.00 30.72 C
ATOM 12 O2' A B 22 9.104 14.611 12.947 1.00 33.00 O
ATOM 13 C1' A B 22 10.083 12.730 14.091 1.00 30.14 C
ATOM 14 N9 A B 22 11.394 12.126 14.353 1.00 26.83 N
ATOM 15 C8 A B 22 11.795 10.818 14.421 1.00 26.93 C
ATOM 16 N7 A B 22 13.058 10.672 14.757 1.00 26.54 N
ATOM 17 C5 A B 22 13.518 11.966 14.906 1.00 24.97 C
ATOM 18 C6 A B 22 14.774 12.509 15.282 1.00 25.53 C
ATOM 19 N6 A B 22 15.832 11.790 15.592 1.00 21.47 N
ATOM 20 N1 A B 22 14.889 13.844 15.330 1.00 24.40 N
ATOM 21 C2 A B 22 13.818 14.594 15.038 1.00 27.78 C
ATOM 22 N3 A B 22 12.589 14.207 14.692 1.00 27.08 N
ATOM 23 C4 A B 22 12.509 12.871 14.639 1.00 26.86 C
ATOM 24 P C B 23 9.503 12.976 9.247 1.00 34.99 P
ATOM 25 OP1 C B 23 8.487 13.556 8.292 1.00 36.63 O
ATOM 26 OP2 C B 23 10.125 11.664 8.950 1.00 32.03 O
ATOM 27 O5' C B 23 10.699 14.032 9.329 1.00 31.34 O
TER
ATOM 2 P C A 5 23.631 16.718 19.323 1.00 19.02 P
ATOM 3 OP1 C A 5 24.370 17.839 19.952 1.00 18.77 O
ATOM 4 OP2 C A 5 23.420 15.425 20.029 1.00 17.93 O
ATOM 5 O5' C A 5 22.142 17.192 18.942 1.00 19.20 O
ATOM 6 C5' C A 5 21.886 18.464 18.336 1.00 19.90 C
ATOM 7 C4' C A 5 20.464 18.500 17.810 1.00 20.15 C
ATOM 8 O4' C A 5 20.306 17.602 16.662 1.00 21.19 O
ATOM 9 C3' C A 5 19.369 18.068 18.763 1.00 18.50 C
ATOM 10 O3' C A 5 19.044 19.097 19.708 1.00 19.56 O
ATOM 11 C2' C A 5 18.234 17.761 17.779 1.00 21.47 C
ATOM 12 O2' C A 5 17.748 18.963 17.185 1.00 21.80 O
ATOM 13 C1' C A 5 19.008 17.008 16.685 1.00 20.96 C
ATOM 14 N1 C A 5 19.112 15.556 16.909 1.00 22.05 N
ATOM 15 C2 C A 5 18.073 14.731 16.471 1.00 22.16 C
ATOM 16 O2 C A 5 17.083 15.255 15.929 1.00 24.25 O
ATOM 17 N3 C A 5 18.156 13.398 16.653 1.00 24.32 N
ATOM 18 C4 C A 5 19.228 12.871 17.270 1.00 25.29 C
ATOM 19 N4 C A 5 19.295 11.537 17.408 1.00 23.08 N
ATOM 20 C5 C A 5 20.289 13.692 17.763 1.00 23.04 C
ATOM 21 C6 C A 5 20.196 15.014 17.552 1.00 23.47 C
ATOM 22 P C A 6 18.322 18.705 21.091 1.00 19.01 P
ATOM 23 OP1 C A 6 18.327 19.905 21.923 1.00 18.90 O
ATOM 24 OP2 C A 6 18.943 17.427 21.623 1.00 19.27 O
ATOM 25 O5' C A 6 16.830 18.340 20.684 1.00 21.28 O
TER
ATOM 1 O3' G B 21 7.619 7.267 13.376 1.00 42.11 O
ATOM 2 P A B 22 8.343 7.820 12.046 1.00 43.32 P
ATOM 3 OP1 A B 22 7.524 7.391 10.880 1.00 45.13 O
ATOM 4 OP2 A B 22 9.820 7.603 12.036 1.00 41.65 O
ATOM 5 O5' A B 22 8.097 9.361 12.191 1.00 40.29 O
ATOM 6 C5' A B 22 9.176 10.194 12.228 1.00 37.08 C
ATOM 7 C4' A B 22 8.737 11.545 12.605 1.00 33.47 C
ATOM 8 O4' A B 22 9.103 11.721 13.999 1.00 31.04 O
ATOM 9 C3' A B 22 9.578 12.512 11.797 1.00 33.09 C
ATOM 10 O3' A B 22 8.856 13.038 10.695 1.00 34.09 O
ATOM 11 C2' A B 22 10.008 13.556 12.806 1.00 30.72 C
ATOM 12 O2' A B 22 9.104 14.611 12.947 1.00 33.00 O
ATOM 13 C1' A B 22 10.083 12.730 14.091 1.00 30.14 C
ATOM 14 N9 A B 22 11.394 12.126 14.353 1.00 26.83 N
ATOM 15 C8 A B 22 11.795 10.818 14.421 1.00 26.93 C
ATOM 16 N7 A B 22 13.058 10.672 14.757 1.00 26.54 N
ATOM 17 C5 A B 22 13.518 11.966 14.906 1.00 24.97 C
ATOM 18 C6 A B 22 14.774 12.509 15.282 1.00 25.53 C
ATOM 19 N6 A B 22 15.832 11.790 15.592 1.00 21.47 N
ATOM 20 N1 A B 22 14.889 13.844 15.330 1.00 24.40 N
ATOM 21 C2 A B 22 13.818 14.594 15.038 1.00 27.78 C
ATOM 22 N3 A B 22 12.589 14.207 14.692 1.00 27.08 N
ATOM 23 C4 A B 22 12.509 12.871 14.639 1.00 26.86 C
ATOM 24 P C B 23 9.503 12.976 9.247 1.00 34.99 P
ATOM 25 OP1 C B 23 8.487 13.556 8.292 1.00 36.63 O
ATOM 26 OP2 C B 23 10.125 11.664 8.950 1.00 32.03 O
ATOM 27 O5' C B 23 10.699 14.032 9.329 1.00 31.34 O
TER
Atoms:
C2: (18.073,14.731,16.471)
OP1: (24.370,17.839,19.952)
OP2: (23.420,15.425,20.029)
C4: (19.228,12.871,17.270)
O5': (22.142,17.192,18.942)
C3': (19.369,18.068,18.763)
C1': (19.008,17.008,16.685)
O4': (20.306,17.602,16.662)
C5': (21.886,18.464,18.336)
P: (23.631,16.718,19.323)
O2: (17.083,15.255,15.929)
C4': (20.464,18.500,17.810)
C2': (18.234,17.761,17.779)
O2': (17.748,18.963,17.185)
N1: (19.112,15.556,16.909)
N3: (18.156,13.398,16.653)
N4: (19.295,11.537,17.408)
C6: (20.196,15.014,17.552)
C5: (20.289,13.692,17.763)
O3': (19.044,19.097,19.708)
OP1: (24.370,17.839,19.952)
OP2: (23.420,15.425,20.029)
C4: (19.228,12.871,17.270)
O5': (22.142,17.192,18.942)
C3': (19.369,18.068,18.763)
C1': (19.008,17.008,16.685)
O4': (20.306,17.602,16.662)
C5': (21.886,18.464,18.336)
P: (23.631,16.718,19.323)
O2: (17.083,15.255,15.929)
C4': (20.464,18.500,17.810)
C2': (18.234,17.761,17.779)
O2': (17.748,18.963,17.185)
N1: (19.112,15.556,16.909)
N3: (18.156,13.398,16.653)
N4: (19.295,11.537,17.408)
C6: (20.196,15.014,17.552)
C5: (20.289,13.692,17.763)
O3': (19.044,19.097,19.708)
OP1: (7.524,7.391,10.880)
OP2: (9.820,7.603,12.036)
C3': (9.578,12.512,11.797)
C1': (10.083,12.730,14.091)
C5': (9.176,10.194,12.228)
O4': (9.103,11.721,13.999)
C8: (11.795,10.818,14.421)
O2': (9.104,14.611,12.947)
C6: (14.774,12.509,15.282)
C5: (13.518,11.966,14.906)
C4: (12.509,12.871,14.639)
P: (8.343,7.820,12.046)
C4': (8.737,11.545,12.605)
C2': (10.008,13.556,12.806)
C2: (13.818,14.594,15.038)
N1: (14.889,13.844,15.330)
N3: (12.589,14.207,14.692)
N6: (15.832,11.790,15.592)
N7: (13.058,10.672,14.757)
N9: (11.394,12.126,14.353)
O5': (8.097,9.361,12.191)
O3': (8.856,13.038,10.695)
OP2: (9.820,7.603,12.036)
C3': (9.578,12.512,11.797)
C1': (10.083,12.730,14.091)
C5': (9.176,10.194,12.228)
O4': (9.103,11.721,13.999)
C8: (11.795,10.818,14.421)
O2': (9.104,14.611,12.947)
C6: (14.774,12.509,15.282)
C5: (13.518,11.966,14.906)
C4: (12.509,12.871,14.639)
P: (8.343,7.820,12.046)
C4': (8.737,11.545,12.605)
C2': (10.008,13.556,12.806)
C2: (13.818,14.594,15.038)
N1: (14.889,13.844,15.330)
N3: (12.589,14.207,14.692)
N6: (15.832,11.790,15.592)
N7: (13.058,10.672,14.757)
N9: (11.394,12.126,14.353)
O5': (8.097,9.361,12.191)
O3': (8.856,13.038,10.695)
Image (generated by PyMOL):