Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11885:11914
Extra
PDB:
ATOM 1 O3' G A1884 1.807 68.601 95.563 1.00 63.33 O
ATOM 2 P C A1885 1.280 68.775 97.060 1.00 60.24 P
ATOM 3 OP1 C A1885 2.442 69.080 97.926 1.00 60.35 O
ATOM 4 OP2 C A1885 0.461 67.571 97.347 1.00 59.84 O
ATOM 5 O5' C A1885 0.356 70.054 96.954 1.00 61.06 O
ATOM 6 C5' C A1885 0.889 71.281 96.517 1.00 61.51 C
ATOM 7 C4' C A1885 -0.196 72.244 96.141 1.00 62.17 C
ATOM 8 O4' C A1885 -0.982 71.692 95.053 1.00 61.83 O
ATOM 9 C3' C A1885 -1.225 72.550 97.229 1.00 62.75 C
ATOM 10 O3' C A1885 -0.794 73.536 98.128 1.00 63.37 O
ATOM 11 C2' C A1885 -2.435 72.965 96.429 1.00 63.07 C
ATOM 12 O2' C A1885 -2.249 74.273 95.930 1.00 63.65 O
ATOM 13 C1' C A1885 -2.354 71.986 95.262 1.00 62.31 C
ATOM 14 N1 C A1885 -3.049 70.709 95.557 1.00 61.84 N
ATOM 15 C2 C A1885 -4.415 70.633 95.361 1.00 62.06 C
ATOM 16 O2 C A1885 -4.951 71.675 94.976 1.00 62.66 O
ATOM 17 N3 C A1885 -5.075 69.460 95.593 1.00 61.64 N
ATOM 18 C4 C A1885 -4.385 68.391 96.010 1.00 61.01 C
ATOM 19 N4 C A1885 -5.027 67.241 96.234 1.00 60.61 N
ATOM 20 C5 C A1885 -2.973 68.443 96.222 1.00 60.77 C
ATOM 21 C6 C A1885 -2.355 69.598 95.973 1.00 61.19 C
ATOM 22 P U A1886 -1.267 73.473 99.654 1.00 77.80 P
ATOM 23 OP1 U A1886 -0.480 74.506 100.392 1.00 78.36 O
ATOM 24 OP2 U A1886 -1.170 72.073 100.078 1.00 77.12 O
ATOM 25 O5' U A1886 -2.803 73.905 99.573 1.00 78.34 O
TER
ATOM 1 O3' A B1913 -17.327 69.277 93.741 1.00 96.26 O
ATOM 2 P A B1914 -16.526 69.748 92.443 1.00 80.03 P
ATOM 3 OP1 A B1914 -17.443 69.582 91.275 1.00 80.02 O
ATOM 4 OP2 A B1914 -15.217 69.014 92.443 1.00 79.29 O
ATOM 5 O5' A B1914 -16.276 71.300 92.734 1.00 80.82 O
ATOM 6 C5' A B1914 -15.273 71.997 92.012 1.00 80.81 C
ATOM 7 C4' A B1914 -14.601 73.067 92.830 1.00 81.33 C
ATOM 8 O4' A B1914 -14.149 72.534 94.096 1.00 81.13 O
ATOM 9 C3' A B1914 -13.352 73.632 92.205 1.00 81.20 C
ATOM 10 O3' A B1914 -13.629 74.592 91.233 1.00 81.66 O
ATOM 11 C2' A B1914 -12.568 74.155 93.387 1.00 81.47 C
ATOM 12 O2' A B1914 -13.074 75.399 93.822 1.00 82.37 O
ATOM 13 C1' A B1914 -12.896 73.105 94.433 1.00 81.16 C
ATOM 14 N9 A B1914 -11.877 72.034 94.477 1.00 80.33 N
ATOM 15 C8 A B1914 -12.110 70.686 94.489 1.00 79.67 C
ATOM 16 N7 A B1914 -11.035 69.954 94.567 1.00 79.03 N
ATOM 17 C5 A B1914 -10.015 70.877 94.604 1.00 79.26 C
ATOM 18 C6 A B1914 -8.638 70.707 94.694 1.00 78.85 C
ATOM 19 N6 A B1914 -8.023 69.542 94.751 1.00 78.11 N
ATOM 20 N1 A B1914 -7.906 71.816 94.731 1.00 79.27 N
ATOM 21 C2 A B1914 -8.527 72.997 94.683 1.00 80.05 C
ATOM 22 N3 A B1914 -9.804 73.295 94.590 1.00 80.50 N
ATOM 23 C4 A B1914 -10.513 72.167 94.558 1.00 80.07 C
ATOM 24 P C B1915 -13.252 74.272 89.736 1.00 77.04 P
ATOM 25 OP1 C B1915 -14.153 75.041 88.872 1.00 77.59 O
ATOM 26 OP2 C B1915 -13.242 72.814 89.621 1.00 76.23 O
ATOM 27 O5' C B1915 -11.784 74.851 89.633 1.00 76.96 O
TER
ATOM 2 P C A1885 1.280 68.775 97.060 1.00 60.24 P
ATOM 3 OP1 C A1885 2.442 69.080 97.926 1.00 60.35 O
ATOM 4 OP2 C A1885 0.461 67.571 97.347 1.00 59.84 O
ATOM 5 O5' C A1885 0.356 70.054 96.954 1.00 61.06 O
ATOM 6 C5' C A1885 0.889 71.281 96.517 1.00 61.51 C
ATOM 7 C4' C A1885 -0.196 72.244 96.141 1.00 62.17 C
ATOM 8 O4' C A1885 -0.982 71.692 95.053 1.00 61.83 O
ATOM 9 C3' C A1885 -1.225 72.550 97.229 1.00 62.75 C
ATOM 10 O3' C A1885 -0.794 73.536 98.128 1.00 63.37 O
ATOM 11 C2' C A1885 -2.435 72.965 96.429 1.00 63.07 C
ATOM 12 O2' C A1885 -2.249 74.273 95.930 1.00 63.65 O
ATOM 13 C1' C A1885 -2.354 71.986 95.262 1.00 62.31 C
ATOM 14 N1 C A1885 -3.049 70.709 95.557 1.00 61.84 N
ATOM 15 C2 C A1885 -4.415 70.633 95.361 1.00 62.06 C
ATOM 16 O2 C A1885 -4.951 71.675 94.976 1.00 62.66 O
ATOM 17 N3 C A1885 -5.075 69.460 95.593 1.00 61.64 N
ATOM 18 C4 C A1885 -4.385 68.391 96.010 1.00 61.01 C
ATOM 19 N4 C A1885 -5.027 67.241 96.234 1.00 60.61 N
ATOM 20 C5 C A1885 -2.973 68.443 96.222 1.00 60.77 C
ATOM 21 C6 C A1885 -2.355 69.598 95.973 1.00 61.19 C
ATOM 22 P U A1886 -1.267 73.473 99.654 1.00 77.80 P
ATOM 23 OP1 U A1886 -0.480 74.506 100.392 1.00 78.36 O
ATOM 24 OP2 U A1886 -1.170 72.073 100.078 1.00 77.12 O
ATOM 25 O5' U A1886 -2.803 73.905 99.573 1.00 78.34 O
TER
ATOM 1 O3' A B1913 -17.327 69.277 93.741 1.00 96.26 O
ATOM 2 P A B1914 -16.526 69.748 92.443 1.00 80.03 P
ATOM 3 OP1 A B1914 -17.443 69.582 91.275 1.00 80.02 O
ATOM 4 OP2 A B1914 -15.217 69.014 92.443 1.00 79.29 O
ATOM 5 O5' A B1914 -16.276 71.300 92.734 1.00 80.82 O
ATOM 6 C5' A B1914 -15.273 71.997 92.012 1.00 80.81 C
ATOM 7 C4' A B1914 -14.601 73.067 92.830 1.00 81.33 C
ATOM 8 O4' A B1914 -14.149 72.534 94.096 1.00 81.13 O
ATOM 9 C3' A B1914 -13.352 73.632 92.205 1.00 81.20 C
ATOM 10 O3' A B1914 -13.629 74.592 91.233 1.00 81.66 O
ATOM 11 C2' A B1914 -12.568 74.155 93.387 1.00 81.47 C
ATOM 12 O2' A B1914 -13.074 75.399 93.822 1.00 82.37 O
ATOM 13 C1' A B1914 -12.896 73.105 94.433 1.00 81.16 C
ATOM 14 N9 A B1914 -11.877 72.034 94.477 1.00 80.33 N
ATOM 15 C8 A B1914 -12.110 70.686 94.489 1.00 79.67 C
ATOM 16 N7 A B1914 -11.035 69.954 94.567 1.00 79.03 N
ATOM 17 C5 A B1914 -10.015 70.877 94.604 1.00 79.26 C
ATOM 18 C6 A B1914 -8.638 70.707 94.694 1.00 78.85 C
ATOM 19 N6 A B1914 -8.023 69.542 94.751 1.00 78.11 N
ATOM 20 N1 A B1914 -7.906 71.816 94.731 1.00 79.27 N
ATOM 21 C2 A B1914 -8.527 72.997 94.683 1.00 80.05 C
ATOM 22 N3 A B1914 -9.804 73.295 94.590 1.00 80.50 N
ATOM 23 C4 A B1914 -10.513 72.167 94.558 1.00 80.07 C
ATOM 24 P C B1915 -13.252 74.272 89.736 1.00 77.04 P
ATOM 25 OP1 C B1915 -14.153 75.041 88.872 1.00 77.59 O
ATOM 26 OP2 C B1915 -13.242 72.814 89.621 1.00 76.23 O
ATOM 27 O5' C B1915 -11.784 74.851 89.633 1.00 76.96 O
TER
Atoms:
C2: (-4.415,70.633,95.361)
OP1: (2.442,69.080,97.926)
OP2: (0.461,67.571,97.347)
C4: (-4.385,68.391,96.010)
O5': (0.356,70.054,96.954)
C3': (-1.225,72.550,97.229)
C1': (-2.354,71.986,95.262)
O4': (-0.982,71.692,95.053)
C5': (0.889,71.281,96.517)
P: (1.280,68.775,97.060)
O2: (-4.951,71.675,94.976)
C4': (-0.196,72.244,96.141)
C2': (-2.435,72.965,96.429)
O2': (-2.249,74.273,95.930)
N1: (-3.049,70.709,95.557)
N3: (-5.075,69.460,95.593)
N4: (-5.027,67.241,96.234)
C6: (-2.355,69.598,95.973)
C5: (-2.973,68.443,96.222)
O3': (-0.794,73.536,98.128)
OP1: (2.442,69.080,97.926)
OP2: (0.461,67.571,97.347)
C4: (-4.385,68.391,96.010)
O5': (0.356,70.054,96.954)
C3': (-1.225,72.550,97.229)
C1': (-2.354,71.986,95.262)
O4': (-0.982,71.692,95.053)
C5': (0.889,71.281,96.517)
P: (1.280,68.775,97.060)
O2: (-4.951,71.675,94.976)
C4': (-0.196,72.244,96.141)
C2': (-2.435,72.965,96.429)
O2': (-2.249,74.273,95.930)
N1: (-3.049,70.709,95.557)
N3: (-5.075,69.460,95.593)
N4: (-5.027,67.241,96.234)
C6: (-2.355,69.598,95.973)
C5: (-2.973,68.443,96.222)
O3': (-0.794,73.536,98.128)
OP1: (-17.443,69.582,91.275)
OP2: (-15.217,69.014,92.443)
C3': (-13.352,73.632,92.205)
C1': (-12.896,73.105,94.433)
C5': (-15.273,71.997,92.012)
O4': (-14.149,72.534,94.096)
C8: (-12.110,70.686,94.489)
O2': (-13.074,75.399,93.822)
C6: (-8.638,70.707,94.694)
C5: (-10.015,70.877,94.604)
C4: (-10.513,72.167,94.558)
P: (-16.526,69.748,92.443)
C4': (-14.601,73.067,92.830)
C2': (-12.568,74.155,93.387)
C2: (-8.527,72.997,94.683)
N1: (-7.906,71.816,94.731)
N3: (-9.804,73.295,94.590)
N6: (-8.023,69.542,94.751)
N7: (-11.035,69.954,94.567)
N9: (-11.877,72.034,94.477)
O5': (-16.276,71.300,92.734)
O3': (-13.629,74.592,91.233)
OP2: (-15.217,69.014,92.443)
C3': (-13.352,73.632,92.205)
C1': (-12.896,73.105,94.433)
C5': (-15.273,71.997,92.012)
O4': (-14.149,72.534,94.096)
C8: (-12.110,70.686,94.489)
O2': (-13.074,75.399,93.822)
C6: (-8.638,70.707,94.694)
C5: (-10.015,70.877,94.604)
C4: (-10.513,72.167,94.558)
P: (-16.526,69.748,92.443)
C4': (-14.601,73.067,92.830)
C2': (-12.568,74.155,93.387)
C2: (-8.527,72.997,94.683)
N1: (-7.906,71.816,94.731)
N3: (-9.804,73.295,94.590)
N6: (-8.023,69.542,94.751)
N7: (-11.035,69.954,94.567)
N9: (-11.877,72.034,94.477)
O5': (-16.276,71.300,92.734)
O3': (-13.629,74.592,91.233)
Image (generated by PyMOL):