Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3DIY:A52:A53
Extra
PDB:
ATOM 1 O3' U A 51 -17.959 62.615 6.403 1.00 44.39 O
ATOM 2 P C A 52 -17.150 63.677 7.307 1.00 45.10 P
ATOM 3 OP1 C A 52 -17.640 65.016 6.905 1.00 44.62 O
ATOM 4 OP2 C A 52 -15.693 63.389 7.260 1.00 44.89 O
ATOM 5 O5' C A 52 -17.693 63.391 8.788 1.00 44.94 O
ATOM 6 C5' C A 52 -17.034 63.938 9.934 1.00 44.72 C
ATOM 7 C4' C A 52 -17.519 63.271 11.212 1.00 44.53 C
ATOM 8 O4' C A 52 -18.963 63.141 11.183 1.00 44.52 O
ATOM 9 C3' C A 52 -16.966 61.870 11.443 1.00 44.53 C
ATOM 10 O3' C A 52 -16.369 61.784 12.732 1.00 44.63 O
ATOM 11 C2' C A 52 -18.166 60.932 11.326 1.00 44.43 C
ATOM 12 O2' C A 52 -18.128 59.879 12.270 1.00 44.53 O
ATOM 13 C1' C A 52 -19.340 61.854 11.627 1.00 44.21 C
ATOM 14 N1 C A 52 -20.597 61.439 10.933 1.00 43.86 N
ATOM 15 C2 C A 52 -21.622 60.800 11.653 1.00 43.63 C
ATOM 16 O2 C A 52 -21.490 60.580 12.866 1.00 43.23 O
ATOM 17 N3 C A 52 -22.751 60.435 10.990 1.00 43.69 N
ATOM 18 C4 C A 52 -22.872 60.679 9.678 1.00 43.80 C
ATOM 19 N4 C A 52 -24.001 60.301 9.071 1.00 44.03 N
ATOM 20 C5 C A 52 -21.842 61.324 8.927 1.00 43.83 C
ATOM 21 C6 C A 52 -20.736 61.681 9.590 1.00 43.93 C
ATOM 22 P G A 53 -14.776 61.765 12.872 1.00 44.82 P
ATOM 23 OP1 G A 53 -14.440 61.422 14.274 1.00 44.89 O
ATOM 24 OP2 G A 53 -14.275 63.026 12.278 1.00 45.16 O
ATOM 25 O5' G A 53 -14.318 60.561 11.922 1.00 44.20 O
TER
ATOM 1 O3' C B 52 -16.369 61.784 12.732 1.00 44.63 O
ATOM 2 P G B 53 -14.776 61.765 12.872 1.00 44.82 P
ATOM 3 OP1 G B 53 -14.440 61.422 14.274 1.00 44.89 O
ATOM 4 OP2 G B 53 -14.275 63.026 12.278 1.00 45.16 O
ATOM 5 O5' G B 53 -14.318 60.561 11.922 1.00 44.20 O
ATOM 6 C5' G B 53 -14.693 59.215 12.209 1.00 43.22 C
ATOM 7 C4' G B 53 -14.247 58.275 11.103 1.00 42.28 C
ATOM 8 O4' G B 53 -14.622 58.789 9.795 1.00 42.31 O
ATOM 9 C3' G B 53 -12.744 58.071 11.005 1.00 41.59 C
ATOM 10 O3' G B 53 -12.304 57.112 11.961 1.00 40.33 O
ATOM 11 C2' G B 53 -12.635 57.547 9.580 1.00 41.98 C
ATOM 12 O2' G B 53 -13.030 56.192 9.476 1.00 42.00 O
ATOM 13 C1' G B 53 -13.612 58.471 8.851 1.00 42.51 C
ATOM 14 N9 G B 53 -12.983 59.707 8.369 1.00 42.83 N
ATOM 15 C8 G B 53 -13.272 60.990 8.777 1.00 43.03 C
ATOM 16 N7 G B 53 -12.553 61.909 8.195 1.00 43.24 N
ATOM 17 C5 G B 53 -11.724 61.195 7.340 1.00 43.10 C
ATOM 18 C6 G B 53 -10.724 61.657 6.445 1.00 43.03 C
ATOM 19 O6 G B 53 -10.372 62.827 6.234 1.00 43.12 O
ATOM 20 N1 G B 53 -10.107 60.611 5.754 1.00 42.92 N
ATOM 21 C2 G B 53 -10.419 59.279 5.913 1.00 42.81 C
ATOM 22 N2 G B 53 -9.725 58.407 5.168 1.00 42.48 N
ATOM 23 N3 G B 53 -11.354 58.835 6.749 1.00 43.01 N
ATOM 24 C4 G B 53 -11.973 59.839 7.431 1.00 43.04 C
ATOM 25 P G B 54 -11.023 57.384 12.884 1.00 39.30 P
ATOM 26 OP1 G B 54 -11.089 56.420 14.001 1.00 39.19 O
ATOM 27 OP2 G B 54 -10.933 58.833 13.165 1.00 39.33 O
ATOM 28 O5' G B 54 -9.781 57.008 11.953 1.00 39.20 O
TER
ATOM 2 P C A 52 -17.150 63.677 7.307 1.00 45.10 P
ATOM 3 OP1 C A 52 -17.640 65.016 6.905 1.00 44.62 O
ATOM 4 OP2 C A 52 -15.693 63.389 7.260 1.00 44.89 O
ATOM 5 O5' C A 52 -17.693 63.391 8.788 1.00 44.94 O
ATOM 6 C5' C A 52 -17.034 63.938 9.934 1.00 44.72 C
ATOM 7 C4' C A 52 -17.519 63.271 11.212 1.00 44.53 C
ATOM 8 O4' C A 52 -18.963 63.141 11.183 1.00 44.52 O
ATOM 9 C3' C A 52 -16.966 61.870 11.443 1.00 44.53 C
ATOM 10 O3' C A 52 -16.369 61.784 12.732 1.00 44.63 O
ATOM 11 C2' C A 52 -18.166 60.932 11.326 1.00 44.43 C
ATOM 12 O2' C A 52 -18.128 59.879 12.270 1.00 44.53 O
ATOM 13 C1' C A 52 -19.340 61.854 11.627 1.00 44.21 C
ATOM 14 N1 C A 52 -20.597 61.439 10.933 1.00 43.86 N
ATOM 15 C2 C A 52 -21.622 60.800 11.653 1.00 43.63 C
ATOM 16 O2 C A 52 -21.490 60.580 12.866 1.00 43.23 O
ATOM 17 N3 C A 52 -22.751 60.435 10.990 1.00 43.69 N
ATOM 18 C4 C A 52 -22.872 60.679 9.678 1.00 43.80 C
ATOM 19 N4 C A 52 -24.001 60.301 9.071 1.00 44.03 N
ATOM 20 C5 C A 52 -21.842 61.324 8.927 1.00 43.83 C
ATOM 21 C6 C A 52 -20.736 61.681 9.590 1.00 43.93 C
ATOM 22 P G A 53 -14.776 61.765 12.872 1.00 44.82 P
ATOM 23 OP1 G A 53 -14.440 61.422 14.274 1.00 44.89 O
ATOM 24 OP2 G A 53 -14.275 63.026 12.278 1.00 45.16 O
ATOM 25 O5' G A 53 -14.318 60.561 11.922 1.00 44.20 O
TER
ATOM 1 O3' C B 52 -16.369 61.784 12.732 1.00 44.63 O
ATOM 2 P G B 53 -14.776 61.765 12.872 1.00 44.82 P
ATOM 3 OP1 G B 53 -14.440 61.422 14.274 1.00 44.89 O
ATOM 4 OP2 G B 53 -14.275 63.026 12.278 1.00 45.16 O
ATOM 5 O5' G B 53 -14.318 60.561 11.922 1.00 44.20 O
ATOM 6 C5' G B 53 -14.693 59.215 12.209 1.00 43.22 C
ATOM 7 C4' G B 53 -14.247 58.275 11.103 1.00 42.28 C
ATOM 8 O4' G B 53 -14.622 58.789 9.795 1.00 42.31 O
ATOM 9 C3' G B 53 -12.744 58.071 11.005 1.00 41.59 C
ATOM 10 O3' G B 53 -12.304 57.112 11.961 1.00 40.33 O
ATOM 11 C2' G B 53 -12.635 57.547 9.580 1.00 41.98 C
ATOM 12 O2' G B 53 -13.030 56.192 9.476 1.00 42.00 O
ATOM 13 C1' G B 53 -13.612 58.471 8.851 1.00 42.51 C
ATOM 14 N9 G B 53 -12.983 59.707 8.369 1.00 42.83 N
ATOM 15 C8 G B 53 -13.272 60.990 8.777 1.00 43.03 C
ATOM 16 N7 G B 53 -12.553 61.909 8.195 1.00 43.24 N
ATOM 17 C5 G B 53 -11.724 61.195 7.340 1.00 43.10 C
ATOM 18 C6 G B 53 -10.724 61.657 6.445 1.00 43.03 C
ATOM 19 O6 G B 53 -10.372 62.827 6.234 1.00 43.12 O
ATOM 20 N1 G B 53 -10.107 60.611 5.754 1.00 42.92 N
ATOM 21 C2 G B 53 -10.419 59.279 5.913 1.00 42.81 C
ATOM 22 N2 G B 53 -9.725 58.407 5.168 1.00 42.48 N
ATOM 23 N3 G B 53 -11.354 58.835 6.749 1.00 43.01 N
ATOM 24 C4 G B 53 -11.973 59.839 7.431 1.00 43.04 C
ATOM 25 P G B 54 -11.023 57.384 12.884 1.00 39.30 P
ATOM 26 OP1 G B 54 -11.089 56.420 14.001 1.00 39.19 O
ATOM 27 OP2 G B 54 -10.933 58.833 13.165 1.00 39.33 O
ATOM 28 O5' G B 54 -9.781 57.008 11.953 1.00 39.20 O
TER
Atoms:
C2: (-21.622,60.800,11.653)
OP1: (-17.640,65.016,6.905)
OP2: (-15.693,63.389,7.260)
C4: (-22.872,60.679,9.678)
O5': (-17.693,63.391,8.788)
C3': (-16.966,61.870,11.443)
C1': (-19.340,61.854,11.627)
O4': (-18.963,63.141,11.183)
C5': (-17.034,63.938,9.934)
P: (-17.150,63.677,7.307)
O2: (-21.490,60.580,12.866)
C4': (-17.519,63.271,11.212)
C2': (-18.166,60.932,11.326)
O2': (-18.128,59.879,12.270)
N1: (-20.597,61.439,10.933)
N3: (-22.751,60.435,10.990)
N4: (-24.001,60.301,9.071)
C6: (-20.736,61.681,9.590)
C5: (-21.842,61.324,8.927)
O3': (-16.369,61.784,12.732)
OP1: (-17.640,65.016,6.905)
OP2: (-15.693,63.389,7.260)
C4: (-22.872,60.679,9.678)
O5': (-17.693,63.391,8.788)
C3': (-16.966,61.870,11.443)
C1': (-19.340,61.854,11.627)
O4': (-18.963,63.141,11.183)
C5': (-17.034,63.938,9.934)
P: (-17.150,63.677,7.307)
O2: (-21.490,60.580,12.866)
C4': (-17.519,63.271,11.212)
C2': (-18.166,60.932,11.326)
O2': (-18.128,59.879,12.270)
N1: (-20.597,61.439,10.933)
N3: (-22.751,60.435,10.990)
N4: (-24.001,60.301,9.071)
C6: (-20.736,61.681,9.590)
C5: (-21.842,61.324,8.927)
O3': (-16.369,61.784,12.732)
OP1: (-14.440,61.422,14.274)
OP2: (-14.275,63.026,12.278)
C3': (-12.744,58.071,11.005)
C1': (-13.612,58.471,8.851)
C5': (-14.693,59.215,12.209)
O6: (-10.372,62.827,6.234)
O4': (-14.622,58.789,9.795)
C8: (-13.272,60.990,8.777)
C2: (-10.419,59.279,5.913)
C6: (-10.724,61.657,6.445)
C5: (-11.724,61.195,7.340)
C4: (-11.973,59.839,7.431)
P: (-14.776,61.765,12.872)
C4': (-14.247,58.275,11.103)
C2': (-12.635,57.547,9.580)
O2': (-13.030,56.192,9.476)
N1: (-10.107,60.611,5.754)
N2: (-9.725,58.407,5.168)
N3: (-11.354,58.835,6.749)
N7: (-12.553,61.909,8.195)
N9: (-12.983,59.707,8.369)
O5': (-14.318,60.561,11.922)
O3': (-12.304,57.112,11.961)
OP2: (-14.275,63.026,12.278)
C3': (-12.744,58.071,11.005)
C1': (-13.612,58.471,8.851)
C5': (-14.693,59.215,12.209)
O6: (-10.372,62.827,6.234)
O4': (-14.622,58.789,9.795)
C8: (-13.272,60.990,8.777)
C2: (-10.419,59.279,5.913)
C6: (-10.724,61.657,6.445)
C5: (-11.724,61.195,7.340)
C4: (-11.973,59.839,7.431)
P: (-14.776,61.765,12.872)
C4': (-14.247,58.275,11.103)
C2': (-12.635,57.547,9.580)
O2': (-13.030,56.192,9.476)
N1: (-10.107,60.611,5.754)
N2: (-9.725,58.407,5.168)
N3: (-11.354,58.835,6.749)
N7: (-12.553,61.909,8.195)
N9: (-12.983,59.707,8.369)
O5': (-14.318,60.561,11.922)
O3': (-12.304,57.112,11.961)
Image (generated by PyMOL):