Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1D4R:B23:A4
Extra
PDB:
ATOM 1 O3' A A 22 13.506 0.113 23.697 1.00 54.46 O
ATOM 2 P C A 23 13.324 -0.423 25.200 1.00 55.84 P
ATOM 3 OP1 C A 23 12.679 0.703 25.918 1.00 52.94 O
ATOM 4 OP2 C A 23 14.576 -1.005 25.734 1.00 57.77 O
ATOM 5 O5' C A 23 12.292 -1.632 25.061 1.00 54.78 O
ATOM 6 C5' C A 23 10.930 -1.393 24.743 1.00 49.93 C
ATOM 7 C4' C A 23 10.259 -2.667 24.281 1.00 47.80 C
ATOM 8 O4' C A 23 10.902 -3.183 23.083 1.00 45.52 O
ATOM 9 C3' C A 23 10.243 -3.852 25.236 1.00 48.44 C
ATOM 10 O3' C A 23 9.229 -3.712 26.241 1.00 47.17 O
ATOM 11 C2' C A 23 9.949 -4.989 24.264 1.00 44.36 C
ATOM 12 O2' C A 23 8.610 -4.972 23.813 1.00 41.39 O
ATOM 13 C1' C A 23 10.858 -4.606 23.096 1.00 47.62 C
ATOM 14 N1 C A 23 12.233 -5.146 23.218 1.00 46.15 N
ATOM 15 C2 C A 23 12.486 -6.461 22.773 1.00 49.98 C
ATOM 16 O2 C A 23 11.566 -7.104 22.247 1.00 41.40 O
ATOM 17 N3 C A 23 13.728 -6.992 22.928 1.00 42.23 N
ATOM 18 C4 C A 23 14.694 -6.266 23.495 1.00 47.87 C
ATOM 19 N4 C A 23 15.878 -6.844 23.677 1.00 46.73 N
ATOM 20 C5 C A 23 14.479 -4.917 23.917 1.00 52.53 C
ATOM 21 C6 C A 23 13.245 -4.403 23.764 1.00 47.57 C
ATOM 22 P C A 24 9.437 -4.390 27.687 1.00 56.41 P
ATOM 23 OP1 C A 24 8.510 -3.695 28.606 1.00 58.93 O
ATOM 24 OP2 C A 24 10.887 -4.429 28.012 1.00 56.20 O
ATOM 25 O5' C A 24 8.933 -5.892 27.499 1.00 53.00 O
TER
ATOM 1 O3' G B 3 14.526 -18.084 18.890 1.00 51.49 O
ATOM 2 P A B 4 14.307 -17.028 17.706 1.00 56.60 P
ATOM 3 OP1 A B 4 14.120 -17.836 16.474 1.00 54.03 O
ATOM 4 OP2 A B 4 15.363 -15.987 17.754 1.00 49.58 O
ATOM 5 O5' A B 4 12.938 -16.298 18.075 1.00 51.59 O
ATOM 6 C5' A B 4 11.718 -17.013 18.147 1.00 48.39 C
ATOM 7 C4' A B 4 10.593 -16.078 18.521 1.00 46.18 C
ATOM 8 O4' A B 4 10.788 -15.551 19.864 1.00 41.28 O
ATOM 9 C3' A B 4 10.420 -14.836 17.661 1.00 46.48 C
ATOM 10 O3' A B 4 9.703 -15.164 16.478 1.00 43.29 O
ATOM 11 C2' A B 4 9.594 -13.957 18.586 1.00 45.15 C
ATOM 12 O2' A B 4 8.258 -14.401 18.669 1.00 48.16 O
ATOM 13 C1' A B 4 10.268 -14.232 19.929 1.00 46.37 C
ATOM 14 N9 A B 4 11.354 -13.307 20.261 1.00 40.41 N
ATOM 15 C8 A B 4 12.712 -13.538 20.218 1.00 50.38 C
ATOM 16 N7 A B 4 13.433 -12.521 20.626 1.00 46.63 N
ATOM 17 C5 A B 4 12.493 -11.551 20.946 1.00 43.78 C
ATOM 18 C6 A B 4 12.616 -10.244 21.445 1.00 35.96 C
ATOM 19 N6 A B 4 13.785 -9.658 21.715 1.00 44.72 N
ATOM 20 N1 A B 4 11.477 -9.546 21.663 1.00 45.59 N
ATOM 21 C2 A B 4 10.303 -10.126 21.384 1.00 36.73 C
ATOM 22 N3 A B 4 10.061 -11.340 20.906 1.00 40.23 N
ATOM 23 C4 A B 4 11.210 -12.016 20.714 1.00 44.39 C
ATOM 24 P C B 5 10.092 -14.475 15.088 1.00 50.52 P
ATOM 25 OP1 C B 5 9.314 -15.180 14.053 1.00 51.29 O
ATOM 26 OP2 C B 5 11.565 -14.372 14.947 1.00 50.98 O
ATOM 27 O5' C B 5 9.519 -12.993 15.233 1.00 50.95 O
TER
ATOM 2 P C A 23 13.324 -0.423 25.200 1.00 55.84 P
ATOM 3 OP1 C A 23 12.679 0.703 25.918 1.00 52.94 O
ATOM 4 OP2 C A 23 14.576 -1.005 25.734 1.00 57.77 O
ATOM 5 O5' C A 23 12.292 -1.632 25.061 1.00 54.78 O
ATOM 6 C5' C A 23 10.930 -1.393 24.743 1.00 49.93 C
ATOM 7 C4' C A 23 10.259 -2.667 24.281 1.00 47.80 C
ATOM 8 O4' C A 23 10.902 -3.183 23.083 1.00 45.52 O
ATOM 9 C3' C A 23 10.243 -3.852 25.236 1.00 48.44 C
ATOM 10 O3' C A 23 9.229 -3.712 26.241 1.00 47.17 O
ATOM 11 C2' C A 23 9.949 -4.989 24.264 1.00 44.36 C
ATOM 12 O2' C A 23 8.610 -4.972 23.813 1.00 41.39 O
ATOM 13 C1' C A 23 10.858 -4.606 23.096 1.00 47.62 C
ATOM 14 N1 C A 23 12.233 -5.146 23.218 1.00 46.15 N
ATOM 15 C2 C A 23 12.486 -6.461 22.773 1.00 49.98 C
ATOM 16 O2 C A 23 11.566 -7.104 22.247 1.00 41.40 O
ATOM 17 N3 C A 23 13.728 -6.992 22.928 1.00 42.23 N
ATOM 18 C4 C A 23 14.694 -6.266 23.495 1.00 47.87 C
ATOM 19 N4 C A 23 15.878 -6.844 23.677 1.00 46.73 N
ATOM 20 C5 C A 23 14.479 -4.917 23.917 1.00 52.53 C
ATOM 21 C6 C A 23 13.245 -4.403 23.764 1.00 47.57 C
ATOM 22 P C A 24 9.437 -4.390 27.687 1.00 56.41 P
ATOM 23 OP1 C A 24 8.510 -3.695 28.606 1.00 58.93 O
ATOM 24 OP2 C A 24 10.887 -4.429 28.012 1.00 56.20 O
ATOM 25 O5' C A 24 8.933 -5.892 27.499 1.00 53.00 O
TER
ATOM 1 O3' G B 3 14.526 -18.084 18.890 1.00 51.49 O
ATOM 2 P A B 4 14.307 -17.028 17.706 1.00 56.60 P
ATOM 3 OP1 A B 4 14.120 -17.836 16.474 1.00 54.03 O
ATOM 4 OP2 A B 4 15.363 -15.987 17.754 1.00 49.58 O
ATOM 5 O5' A B 4 12.938 -16.298 18.075 1.00 51.59 O
ATOM 6 C5' A B 4 11.718 -17.013 18.147 1.00 48.39 C
ATOM 7 C4' A B 4 10.593 -16.078 18.521 1.00 46.18 C
ATOM 8 O4' A B 4 10.788 -15.551 19.864 1.00 41.28 O
ATOM 9 C3' A B 4 10.420 -14.836 17.661 1.00 46.48 C
ATOM 10 O3' A B 4 9.703 -15.164 16.478 1.00 43.29 O
ATOM 11 C2' A B 4 9.594 -13.957 18.586 1.00 45.15 C
ATOM 12 O2' A B 4 8.258 -14.401 18.669 1.00 48.16 O
ATOM 13 C1' A B 4 10.268 -14.232 19.929 1.00 46.37 C
ATOM 14 N9 A B 4 11.354 -13.307 20.261 1.00 40.41 N
ATOM 15 C8 A B 4 12.712 -13.538 20.218 1.00 50.38 C
ATOM 16 N7 A B 4 13.433 -12.521 20.626 1.00 46.63 N
ATOM 17 C5 A B 4 12.493 -11.551 20.946 1.00 43.78 C
ATOM 18 C6 A B 4 12.616 -10.244 21.445 1.00 35.96 C
ATOM 19 N6 A B 4 13.785 -9.658 21.715 1.00 44.72 N
ATOM 20 N1 A B 4 11.477 -9.546 21.663 1.00 45.59 N
ATOM 21 C2 A B 4 10.303 -10.126 21.384 1.00 36.73 C
ATOM 22 N3 A B 4 10.061 -11.340 20.906 1.00 40.23 N
ATOM 23 C4 A B 4 11.210 -12.016 20.714 1.00 44.39 C
ATOM 24 P C B 5 10.092 -14.475 15.088 1.00 50.52 P
ATOM 25 OP1 C B 5 9.314 -15.180 14.053 1.00 51.29 O
ATOM 26 OP2 C B 5 11.565 -14.372 14.947 1.00 50.98 O
ATOM 27 O5' C B 5 9.519 -12.993 15.233 1.00 50.95 O
TER
Atoms:
C2: (12.486,-6.461,22.773)
OP1: (12.679,0.703,25.918)
OP2: (14.576,-1.005,25.734)
C4: (14.694,-6.266,23.495)
O5': (12.292,-1.632,25.061)
C3': (10.243,-3.852,25.236)
C1': (10.858,-4.606,23.096)
O4': (10.902,-3.183,23.083)
C5': (10.930,-1.393,24.743)
P: (13.324,-0.423,25.200)
O2: (11.566,-7.104,22.247)
C4': (10.259,-2.667,24.281)
C2': (9.949,-4.989,24.264)
O2': (8.610,-4.972,23.813)
N1: (12.233,-5.146,23.218)
N3: (13.728,-6.992,22.928)
N4: (15.878,-6.844,23.677)
C6: (13.245,-4.403,23.764)
C5: (14.479,-4.917,23.917)
O3': (9.229,-3.712,26.241)
OP1: (12.679,0.703,25.918)
OP2: (14.576,-1.005,25.734)
C4: (14.694,-6.266,23.495)
O5': (12.292,-1.632,25.061)
C3': (10.243,-3.852,25.236)
C1': (10.858,-4.606,23.096)
O4': (10.902,-3.183,23.083)
C5': (10.930,-1.393,24.743)
P: (13.324,-0.423,25.200)
O2: (11.566,-7.104,22.247)
C4': (10.259,-2.667,24.281)
C2': (9.949,-4.989,24.264)
O2': (8.610,-4.972,23.813)
N1: (12.233,-5.146,23.218)
N3: (13.728,-6.992,22.928)
N4: (15.878,-6.844,23.677)
C6: (13.245,-4.403,23.764)
C5: (14.479,-4.917,23.917)
O3': (9.229,-3.712,26.241)
OP1: (14.120,-17.836,16.474)
OP2: (15.363,-15.987,17.754)
C3': (10.420,-14.836,17.661)
C1': (10.268,-14.232,19.929)
C5': (11.718,-17.013,18.147)
O4': (10.788,-15.551,19.864)
C8: (12.712,-13.538,20.218)
O2': (8.258,-14.401,18.669)
C6: (12.616,-10.244,21.445)
C5: (12.493,-11.551,20.946)
C4: (11.210,-12.016,20.714)
P: (14.307,-17.028,17.706)
C4': (10.593,-16.078,18.521)
C2': (9.594,-13.957,18.586)
C2: (10.303,-10.126,21.384)
N1: (11.477,-9.546,21.663)
N3: (10.061,-11.340,20.906)
N6: (13.785,-9.658,21.715)
N7: (13.433,-12.521,20.626)
N9: (11.354,-13.307,20.261)
O5': (12.938,-16.298,18.075)
O3': (9.703,-15.164,16.478)
OP2: (15.363,-15.987,17.754)
C3': (10.420,-14.836,17.661)
C1': (10.268,-14.232,19.929)
C5': (11.718,-17.013,18.147)
O4': (10.788,-15.551,19.864)
C8: (12.712,-13.538,20.218)
O2': (8.258,-14.401,18.669)
C6: (12.616,-10.244,21.445)
C5: (12.493,-11.551,20.946)
C4: (11.210,-12.016,20.714)
P: (14.307,-17.028,17.706)
C4': (10.593,-16.078,18.521)
C2': (9.594,-13.957,18.586)
C2: (10.303,-10.126,21.384)
N1: (11.477,-9.546,21.663)
N3: (10.061,-11.340,20.906)
N6: (13.785,-9.658,21.715)
N7: (13.433,-12.521,20.626)
N9: (11.354,-13.307,20.261)
O5': (12.938,-16.298,18.075)
O3': (9.703,-15.164,16.478)
Image (generated by PyMOL):