Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1JID:B23:B4
Extra
PDB:
ATOM 1 O3' A A 22 8.856 13.038 10.695 1.00 34.09 O
ATOM 2 P C A 23 9.503 12.976 9.247 1.00 34.99 P
ATOM 3 OP1 C A 23 8.487 13.556 8.292 1.00 36.63 O
ATOM 4 OP2 C A 23 10.125 11.664 8.950 1.00 32.03 O
ATOM 5 O5' C A 23 10.699 14.032 9.329 1.00 31.34 O
ATOM 6 C5' C A 23 10.459 15.380 9.705 1.00 31.11 C
ATOM 7 C4' C A 23 11.770 16.071 10.034 1.00 30.55 C
ATOM 8 O4' C A 23 12.255 15.517 11.293 1.00 29.85 O
ATOM 9 C3' C A 23 12.940 15.813 9.080 1.00 30.05 C
ATOM 10 O3' C A 23 12.902 16.523 7.821 1.00 32.34 O
ATOM 11 C2' C A 23 14.126 16.152 9.971 1.00 26.66 C
ATOM 12 O2' C A 23 14.332 17.530 10.184 1.00 25.89 O
ATOM 13 C1' C A 23 13.678 15.519 11.294 1.00 27.12 C
ATOM 14 N1 C A 23 14.138 14.125 11.469 1.00 24.92 N
ATOM 15 C2 C A 23 15.434 13.882 11.993 1.00 22.44 C
ATOM 16 O2 C A 23 16.206 14.835 12.161 1.00 24.12 O
ATOM 17 N3 C A 23 15.817 12.608 12.254 1.00 23.73 N
ATOM 18 C4 C A 23 15.015 11.588 11.950 1.00 25.76 C
ATOM 19 N4 C A 23 15.453 10.337 12.199 1.00 23.83 N
ATOM 20 C5 C A 23 13.714 11.796 11.358 1.00 25.95 C
ATOM 21 C6 C A 23 13.324 13.072 11.148 1.00 25.38 C
ATOM 22 P C A 24 13.575 15.850 6.515 1.00 33.20 P
ATOM 23 OP1 C A 24 13.146 16.718 5.401 1.00 37.20 O
ATOM 24 OP2 C A 24 13.471 14.403 6.406 1.00 33.24 O
ATOM 25 O5' C A 24 15.159 16.110 6.665 1.00 30.42 O
TER
ATOM 1 O3' G B 3 26.322 10.720 16.773 1.00 18.11 O
ATOM 2 P A B 4 25.259 11.403 17.758 1.00 20.50 P
ATOM 3 OP1 A B 4 25.965 11.695 19.017 1.00 18.50 O
ATOM 4 OP2 A B 4 23.979 10.601 17.803 1.00 20.52 O
ATOM 5 O5' A B 4 24.844 12.802 17.106 1.00 20.00 O
ATOM 6 C5' A B 4 25.809 13.845 16.907 1.00 15.54 C
ATOM 7 C4' A B 4 25.154 15.046 16.262 1.00 18.84 C
ATOM 8 O4' A B 4 24.714 14.699 14.922 1.00 19.66 O
ATOM 9 C3' A B 4 23.922 15.633 16.950 1.00 17.91 C
ATOM 10 O3' A B 4 24.382 16.564 17.912 1.00 17.49 O
ATOM 11 C2' A B 4 23.243 16.368 15.779 1.00 17.34 C
ATOM 12 O2' A B 4 23.838 17.604 15.459 1.00 21.57 O
ATOM 13 C1' A B 4 23.518 15.393 14.629 1.00 19.04 C
ATOM 14 N9 A B 4 22.461 14.406 14.482 1.00 18.60 N
ATOM 15 C8 A B 4 22.422 13.075 14.826 1.00 18.62 C
ATOM 16 N7 A B 4 21.281 12.503 14.542 1.00 20.93 N
ATOM 17 C5 A B 4 20.530 13.530 13.966 1.00 18.33 C
ATOM 18 C6 A B 4 19.222 13.573 13.463 1.00 19.93 C
ATOM 19 N6 A B 4 18.440 12.506 13.389 1.00 17.67 N
ATOM 20 N1 A B 4 18.753 14.763 13.023 1.00 20.84 N
ATOM 21 C2 A B 4 19.561 15.807 13.029 1.00 20.28 C
ATOM 22 N3 A B 4 20.832 15.882 13.450 1.00 22.04 N
ATOM 23 C4 A B 4 21.240 14.693 13.927 1.00 18.97 C
ATOM 24 P C B 5 23.631 16.718 19.323 1.00 19.02 P
ATOM 25 OP1 C B 5 24.370 17.839 19.952 1.00 18.77 O
ATOM 26 OP2 C B 5 23.420 15.425 20.029 1.00 17.93 O
ATOM 27 O5' C B 5 22.142 17.192 18.942 1.00 19.20 O
TER
ATOM 2 P C A 23 9.503 12.976 9.247 1.00 34.99 P
ATOM 3 OP1 C A 23 8.487 13.556 8.292 1.00 36.63 O
ATOM 4 OP2 C A 23 10.125 11.664 8.950 1.00 32.03 O
ATOM 5 O5' C A 23 10.699 14.032 9.329 1.00 31.34 O
ATOM 6 C5' C A 23 10.459 15.380 9.705 1.00 31.11 C
ATOM 7 C4' C A 23 11.770 16.071 10.034 1.00 30.55 C
ATOM 8 O4' C A 23 12.255 15.517 11.293 1.00 29.85 O
ATOM 9 C3' C A 23 12.940 15.813 9.080 1.00 30.05 C
ATOM 10 O3' C A 23 12.902 16.523 7.821 1.00 32.34 O
ATOM 11 C2' C A 23 14.126 16.152 9.971 1.00 26.66 C
ATOM 12 O2' C A 23 14.332 17.530 10.184 1.00 25.89 O
ATOM 13 C1' C A 23 13.678 15.519 11.294 1.00 27.12 C
ATOM 14 N1 C A 23 14.138 14.125 11.469 1.00 24.92 N
ATOM 15 C2 C A 23 15.434 13.882 11.993 1.00 22.44 C
ATOM 16 O2 C A 23 16.206 14.835 12.161 1.00 24.12 O
ATOM 17 N3 C A 23 15.817 12.608 12.254 1.00 23.73 N
ATOM 18 C4 C A 23 15.015 11.588 11.950 1.00 25.76 C
ATOM 19 N4 C A 23 15.453 10.337 12.199 1.00 23.83 N
ATOM 20 C5 C A 23 13.714 11.796 11.358 1.00 25.95 C
ATOM 21 C6 C A 23 13.324 13.072 11.148 1.00 25.38 C
ATOM 22 P C A 24 13.575 15.850 6.515 1.00 33.20 P
ATOM 23 OP1 C A 24 13.146 16.718 5.401 1.00 37.20 O
ATOM 24 OP2 C A 24 13.471 14.403 6.406 1.00 33.24 O
ATOM 25 O5' C A 24 15.159 16.110 6.665 1.00 30.42 O
TER
ATOM 1 O3' G B 3 26.322 10.720 16.773 1.00 18.11 O
ATOM 2 P A B 4 25.259 11.403 17.758 1.00 20.50 P
ATOM 3 OP1 A B 4 25.965 11.695 19.017 1.00 18.50 O
ATOM 4 OP2 A B 4 23.979 10.601 17.803 1.00 20.52 O
ATOM 5 O5' A B 4 24.844 12.802 17.106 1.00 20.00 O
ATOM 6 C5' A B 4 25.809 13.845 16.907 1.00 15.54 C
ATOM 7 C4' A B 4 25.154 15.046 16.262 1.00 18.84 C
ATOM 8 O4' A B 4 24.714 14.699 14.922 1.00 19.66 O
ATOM 9 C3' A B 4 23.922 15.633 16.950 1.00 17.91 C
ATOM 10 O3' A B 4 24.382 16.564 17.912 1.00 17.49 O
ATOM 11 C2' A B 4 23.243 16.368 15.779 1.00 17.34 C
ATOM 12 O2' A B 4 23.838 17.604 15.459 1.00 21.57 O
ATOM 13 C1' A B 4 23.518 15.393 14.629 1.00 19.04 C
ATOM 14 N9 A B 4 22.461 14.406 14.482 1.00 18.60 N
ATOM 15 C8 A B 4 22.422 13.075 14.826 1.00 18.62 C
ATOM 16 N7 A B 4 21.281 12.503 14.542 1.00 20.93 N
ATOM 17 C5 A B 4 20.530 13.530 13.966 1.00 18.33 C
ATOM 18 C6 A B 4 19.222 13.573 13.463 1.00 19.93 C
ATOM 19 N6 A B 4 18.440 12.506 13.389 1.00 17.67 N
ATOM 20 N1 A B 4 18.753 14.763 13.023 1.00 20.84 N
ATOM 21 C2 A B 4 19.561 15.807 13.029 1.00 20.28 C
ATOM 22 N3 A B 4 20.832 15.882 13.450 1.00 22.04 N
ATOM 23 C4 A B 4 21.240 14.693 13.927 1.00 18.97 C
ATOM 24 P C B 5 23.631 16.718 19.323 1.00 19.02 P
ATOM 25 OP1 C B 5 24.370 17.839 19.952 1.00 18.77 O
ATOM 26 OP2 C B 5 23.420 15.425 20.029 1.00 17.93 O
ATOM 27 O5' C B 5 22.142 17.192 18.942 1.00 19.20 O
TER
Atoms:
C2: (15.434,13.882,11.993)
OP1: (8.487,13.556,8.292)
OP2: (10.125,11.664,8.950)
C4: (15.015,11.588,11.950)
O5': (10.699,14.032,9.329)
C3': (12.940,15.813,9.080)
C1': (13.678,15.519,11.294)
O4': (12.255,15.517,11.293)
C5': (10.459,15.380,9.705)
P: (9.503,12.976,9.247)
O2: (16.206,14.835,12.161)
C4': (11.770,16.071,10.034)
C2': (14.126,16.152,9.971)
O2': (14.332,17.530,10.184)
N1: (14.138,14.125,11.469)
N3: (15.817,12.608,12.254)
N4: (15.453,10.337,12.199)
C6: (13.324,13.072,11.148)
C5: (13.714,11.796,11.358)
O3': (12.902,16.523,7.821)
OP1: (8.487,13.556,8.292)
OP2: (10.125,11.664,8.950)
C4: (15.015,11.588,11.950)
O5': (10.699,14.032,9.329)
C3': (12.940,15.813,9.080)
C1': (13.678,15.519,11.294)
O4': (12.255,15.517,11.293)
C5': (10.459,15.380,9.705)
P: (9.503,12.976,9.247)
O2: (16.206,14.835,12.161)
C4': (11.770,16.071,10.034)
C2': (14.126,16.152,9.971)
O2': (14.332,17.530,10.184)
N1: (14.138,14.125,11.469)
N3: (15.817,12.608,12.254)
N4: (15.453,10.337,12.199)
C6: (13.324,13.072,11.148)
C5: (13.714,11.796,11.358)
O3': (12.902,16.523,7.821)
OP1: (25.965,11.695,19.017)
OP2: (23.979,10.601,17.803)
C3': (23.922,15.633,16.950)
C1': (23.518,15.393,14.629)
C5': (25.809,13.845,16.907)
O4': (24.714,14.699,14.922)
C8: (22.422,13.075,14.826)
O2': (23.838,17.604,15.459)
C6: (19.222,13.573,13.463)
C5: (20.530,13.530,13.966)
C4: (21.240,14.693,13.927)
P: (25.259,11.403,17.758)
C4': (25.154,15.046,16.262)
C2': (23.243,16.368,15.779)
C2: (19.561,15.807,13.029)
N1: (18.753,14.763,13.023)
N3: (20.832,15.882,13.450)
N6: (18.440,12.506,13.389)
N7: (21.281,12.503,14.542)
N9: (22.461,14.406,14.482)
O5': (24.844,12.802,17.106)
O3': (24.382,16.564,17.912)
OP2: (23.979,10.601,17.803)
C3': (23.922,15.633,16.950)
C1': (23.518,15.393,14.629)
C5': (25.809,13.845,16.907)
O4': (24.714,14.699,14.922)
C8: (22.422,13.075,14.826)
O2': (23.838,17.604,15.459)
C6: (19.222,13.573,13.463)
C5: (20.530,13.530,13.966)
C4: (21.240,14.693,13.927)
P: (25.259,11.403,17.758)
C4': (25.154,15.046,16.262)
C2': (23.243,16.368,15.779)
C2: (19.561,15.807,13.029)
N1: (18.753,14.763,13.023)
N3: (20.832,15.882,13.450)
N6: (18.440,12.506,13.389)
N7: (21.281,12.503,14.542)
N9: (22.461,14.406,14.482)
O5': (24.844,12.802,17.106)
O3': (24.382,16.564,17.912)
Image (generated by PyMOL):