Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1D4R:B5:A22
Extra
PDB:
ATOM 1 O3' A A 4 23.806 -22.631 -25.516 1.00 58.86 O
ATOM 2 P C A 5 24.101 -22.092 -24.033 1.00 65.56 P
ATOM 3 OP1 C A 5 23.810 -23.190 -23.075 1.00 67.64 O
ATOM 4 OP2 C A 5 23.427 -20.778 -23.870 1.00 58.29 O
ATOM 5 O5' C A 5 25.675 -21.848 -24.026 1.00 59.35 O
ATOM 6 C5' C A 5 26.556 -22.806 -24.602 1.00 60.74 C
ATOM 7 C4' C A 5 27.807 -22.138 -25.111 1.00 58.91 C
ATOM 8 O4' C A 5 27.523 -21.389 -26.327 1.00 57.34 O
ATOM 9 C3' C A 5 28.432 -21.111 -24.183 1.00 59.45 C
ATOM 10 O3' C A 5 29.196 -21.744 -23.156 1.00 63.36 O
ATOM 11 C2' C A 5 29.279 -20.306 -25.159 1.00 59.19 C
ATOM 12 O2' C A 5 30.467 -20.986 -25.514 1.00 55.26 O
ATOM 13 C1' C A 5 28.340 -20.228 -26.371 1.00 57.96 C
ATOM 14 N1 C A 5 27.470 -19.023 -26.434 1.00 54.46 N
ATOM 15 C2 C A 5 28.023 -17.804 -26.875 1.00 53.05 C
ATOM 16 O2 C A 5 29.210 -17.776 -27.215 1.00 44.92 O
ATOM 17 N3 C A 5 27.240 -16.694 -26.925 1.00 44.05 N
ATOM 18 C4 C A 5 25.954 -16.771 -26.576 1.00 55.21 C
ATOM 19 N4 C A 5 25.213 -15.657 -26.646 1.00 55.29 N
ATOM 20 C5 C A 5 25.363 -17.996 -26.137 1.00 59.56 C
ATOM 21 C6 C A 5 26.150 -19.083 -26.077 1.00 52.86 C
ATOM 22 P C A 6 29.295 -21.066 -21.700 1.00 63.68 P
ATOM 23 OP1 C A 6 29.518 -22.151 -20.711 1.00 72.44 O
ATOM 24 OP2 C A 6 28.162 -20.132 -21.508 1.00 65.21 O
ATOM 25 O5' C A 6 30.633 -20.207 -21.776 1.00 61.67 O
TER
ATOM 1 O3' G B 21 32.783 -6.896 -30.608 1.00 29.40 O
ATOM 2 P A B 22 32.351 -7.826 -31.846 1.00 40.60 P
ATOM 3 OP1 A B 22 32.675 -7.153 -33.109 1.00 38.03 O
ATOM 4 OP2 A B 22 30.994 -8.389 -31.643 1.00 37.71 O
ATOM 5 O5' A B 22 33.405 -9.011 -31.793 1.00 47.35 O
ATOM 6 C5' A B 22 33.265 -10.003 -30.835 1.00 50.25 C
ATOM 7 C4' A B 22 34.552 -10.748 -30.651 1.00 48.39 C
ATOM 8 O4' A B 22 34.559 -11.108 -29.246 1.00 47.79 O
ATOM 9 C3' A B 22 34.554 -12.074 -31.418 1.00 45.19 C
ATOM 10 O3' A B 22 35.468 -12.084 -32.507 1.00 43.87 O
ATOM 11 C2' A B 22 34.887 -13.104 -30.345 1.00 47.88 C
ATOM 12 O2' A B 22 36.274 -13.172 -30.086 1.00 48.23 O
ATOM 13 C1' A B 22 34.217 -12.475 -29.129 1.00 49.76 C
ATOM 14 N9 A B 22 32.753 -12.625 -29.046 1.00 47.20 N
ATOM 15 C8 A B 22 31.749 -11.692 -29.217 1.00 48.57 C
ATOM 16 N7 A B 22 30.539 -12.162 -28.996 1.00 37.88 N
ATOM 17 C5 A B 22 30.755 -13.491 -28.668 1.00 43.58 C
ATOM 18 C6 A B 22 29.880 -14.529 -28.315 1.00 45.73 C
ATOM 19 N6 A B 22 28.554 -14.385 -28.199 1.00 36.05 N
ATOM 20 N1 A B 22 30.420 -15.744 -28.068 1.00 50.11 N
ATOM 21 C2 A B 22 31.747 -15.891 -28.156 1.00 48.46 C
ATOM 22 N3 A B 22 32.676 -14.990 -28.463 1.00 45.10 N
ATOM 23 C4 A B 22 32.110 -13.797 -28.715 1.00 47.22 C
ATOM 24 P C B 23 34.951 -12.499 -33.976 1.00 48.80 P
ATOM 25 OP1 C B 23 36.148 -12.640 -34.838 1.00 45.80 O
ATOM 26 OP2 C B 23 33.856 -11.595 -34.407 1.00 46.12 O
ATOM 27 O5' C B 23 34.346 -13.952 -33.751 1.00 42.08 O
TER
ATOM 2 P C A 5 24.101 -22.092 -24.033 1.00 65.56 P
ATOM 3 OP1 C A 5 23.810 -23.190 -23.075 1.00 67.64 O
ATOM 4 OP2 C A 5 23.427 -20.778 -23.870 1.00 58.29 O
ATOM 5 O5' C A 5 25.675 -21.848 -24.026 1.00 59.35 O
ATOM 6 C5' C A 5 26.556 -22.806 -24.602 1.00 60.74 C
ATOM 7 C4' C A 5 27.807 -22.138 -25.111 1.00 58.91 C
ATOM 8 O4' C A 5 27.523 -21.389 -26.327 1.00 57.34 O
ATOM 9 C3' C A 5 28.432 -21.111 -24.183 1.00 59.45 C
ATOM 10 O3' C A 5 29.196 -21.744 -23.156 1.00 63.36 O
ATOM 11 C2' C A 5 29.279 -20.306 -25.159 1.00 59.19 C
ATOM 12 O2' C A 5 30.467 -20.986 -25.514 1.00 55.26 O
ATOM 13 C1' C A 5 28.340 -20.228 -26.371 1.00 57.96 C
ATOM 14 N1 C A 5 27.470 -19.023 -26.434 1.00 54.46 N
ATOM 15 C2 C A 5 28.023 -17.804 -26.875 1.00 53.05 C
ATOM 16 O2 C A 5 29.210 -17.776 -27.215 1.00 44.92 O
ATOM 17 N3 C A 5 27.240 -16.694 -26.925 1.00 44.05 N
ATOM 18 C4 C A 5 25.954 -16.771 -26.576 1.00 55.21 C
ATOM 19 N4 C A 5 25.213 -15.657 -26.646 1.00 55.29 N
ATOM 20 C5 C A 5 25.363 -17.996 -26.137 1.00 59.56 C
ATOM 21 C6 C A 5 26.150 -19.083 -26.077 1.00 52.86 C
ATOM 22 P C A 6 29.295 -21.066 -21.700 1.00 63.68 P
ATOM 23 OP1 C A 6 29.518 -22.151 -20.711 1.00 72.44 O
ATOM 24 OP2 C A 6 28.162 -20.132 -21.508 1.00 65.21 O
ATOM 25 O5' C A 6 30.633 -20.207 -21.776 1.00 61.67 O
TER
ATOM 1 O3' G B 21 32.783 -6.896 -30.608 1.00 29.40 O
ATOM 2 P A B 22 32.351 -7.826 -31.846 1.00 40.60 P
ATOM 3 OP1 A B 22 32.675 -7.153 -33.109 1.00 38.03 O
ATOM 4 OP2 A B 22 30.994 -8.389 -31.643 1.00 37.71 O
ATOM 5 O5' A B 22 33.405 -9.011 -31.793 1.00 47.35 O
ATOM 6 C5' A B 22 33.265 -10.003 -30.835 1.00 50.25 C
ATOM 7 C4' A B 22 34.552 -10.748 -30.651 1.00 48.39 C
ATOM 8 O4' A B 22 34.559 -11.108 -29.246 1.00 47.79 O
ATOM 9 C3' A B 22 34.554 -12.074 -31.418 1.00 45.19 C
ATOM 10 O3' A B 22 35.468 -12.084 -32.507 1.00 43.87 O
ATOM 11 C2' A B 22 34.887 -13.104 -30.345 1.00 47.88 C
ATOM 12 O2' A B 22 36.274 -13.172 -30.086 1.00 48.23 O
ATOM 13 C1' A B 22 34.217 -12.475 -29.129 1.00 49.76 C
ATOM 14 N9 A B 22 32.753 -12.625 -29.046 1.00 47.20 N
ATOM 15 C8 A B 22 31.749 -11.692 -29.217 1.00 48.57 C
ATOM 16 N7 A B 22 30.539 -12.162 -28.996 1.00 37.88 N
ATOM 17 C5 A B 22 30.755 -13.491 -28.668 1.00 43.58 C
ATOM 18 C6 A B 22 29.880 -14.529 -28.315 1.00 45.73 C
ATOM 19 N6 A B 22 28.554 -14.385 -28.199 1.00 36.05 N
ATOM 20 N1 A B 22 30.420 -15.744 -28.068 1.00 50.11 N
ATOM 21 C2 A B 22 31.747 -15.891 -28.156 1.00 48.46 C
ATOM 22 N3 A B 22 32.676 -14.990 -28.463 1.00 45.10 N
ATOM 23 C4 A B 22 32.110 -13.797 -28.715 1.00 47.22 C
ATOM 24 P C B 23 34.951 -12.499 -33.976 1.00 48.80 P
ATOM 25 OP1 C B 23 36.148 -12.640 -34.838 1.00 45.80 O
ATOM 26 OP2 C B 23 33.856 -11.595 -34.407 1.00 46.12 O
ATOM 27 O5' C B 23 34.346 -13.952 -33.751 1.00 42.08 O
TER
Atoms:
C2: (28.023,-17.804,-26.875)
OP1: (23.810,-23.190,-23.075)
OP2: (23.427,-20.778,-23.870)
C4: (25.954,-16.771,-26.576)
O5': (25.675,-21.848,-24.026)
C3': (28.432,-21.111,-24.183)
C1': (28.340,-20.228,-26.371)
O4': (27.523,-21.389,-26.327)
C5': (26.556,-22.806,-24.602)
P: (24.101,-22.092,-24.033)
O2: (29.210,-17.776,-27.215)
C4': (27.807,-22.138,-25.111)
C2': (29.279,-20.306,-25.159)
O2': (30.467,-20.986,-25.514)
N1: (27.470,-19.023,-26.434)
N3: (27.240,-16.694,-26.925)
N4: (25.213,-15.657,-26.646)
C6: (26.150,-19.083,-26.077)
C5: (25.363,-17.996,-26.137)
O3': (29.196,-21.744,-23.156)
OP1: (23.810,-23.190,-23.075)
OP2: (23.427,-20.778,-23.870)
C4: (25.954,-16.771,-26.576)
O5': (25.675,-21.848,-24.026)
C3': (28.432,-21.111,-24.183)
C1': (28.340,-20.228,-26.371)
O4': (27.523,-21.389,-26.327)
C5': (26.556,-22.806,-24.602)
P: (24.101,-22.092,-24.033)
O2: (29.210,-17.776,-27.215)
C4': (27.807,-22.138,-25.111)
C2': (29.279,-20.306,-25.159)
O2': (30.467,-20.986,-25.514)
N1: (27.470,-19.023,-26.434)
N3: (27.240,-16.694,-26.925)
N4: (25.213,-15.657,-26.646)
C6: (26.150,-19.083,-26.077)
C5: (25.363,-17.996,-26.137)
O3': (29.196,-21.744,-23.156)
OP1: (32.675,-7.153,-33.109)
OP2: (30.994,-8.389,-31.643)
C3': (34.554,-12.074,-31.418)
C1': (34.217,-12.475,-29.129)
C5': (33.265,-10.003,-30.835)
O4': (34.559,-11.108,-29.246)
C8: (31.749,-11.692,-29.217)
O2': (36.274,-13.172,-30.086)
C6: (29.880,-14.529,-28.315)
C5: (30.755,-13.491,-28.668)
C4: (32.110,-13.797,-28.715)
P: (32.351,-7.826,-31.846)
C4': (34.552,-10.748,-30.651)
C2': (34.887,-13.104,-30.345)
C2: (31.747,-15.891,-28.156)
N1: (30.420,-15.744,-28.068)
N3: (32.676,-14.990,-28.463)
N6: (28.554,-14.385,-28.199)
N7: (30.539,-12.162,-28.996)
N9: (32.753,-12.625,-29.046)
O5': (33.405,-9.011,-31.793)
O3': (35.468,-12.084,-32.507)
OP2: (30.994,-8.389,-31.643)
C3': (34.554,-12.074,-31.418)
C1': (34.217,-12.475,-29.129)
C5': (33.265,-10.003,-30.835)
O4': (34.559,-11.108,-29.246)
C8: (31.749,-11.692,-29.217)
O2': (36.274,-13.172,-30.086)
C6: (29.880,-14.529,-28.315)
C5: (30.755,-13.491,-28.668)
C4: (32.110,-13.797,-28.715)
P: (32.351,-7.826,-31.846)
C4': (34.552,-10.748,-30.651)
C2': (34.887,-13.104,-30.345)
C2: (31.747,-15.891,-28.156)
N1: (30.420,-15.744,-28.068)
N3: (32.676,-14.990,-28.463)
N6: (28.554,-14.385,-28.199)
N7: (30.539,-12.162,-28.996)
N9: (32.753,-12.625,-29.046)
O5': (33.405,-9.011,-31.793)
O3': (35.468,-12.084,-32.507)
Image (generated by PyMOL):