Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A2468:A2522
Extra
PDB:
ATOM 1 O3' U A2467 -120.170 -46.020 -48.151 1.00 26.03 O
ATOM 2 P C A2468 -120.391 -46.334 -46.600 1.00 11.54 P
ATOM 3 OP1 C A2468 -121.840 -46.539 -46.391 1.00 11.54 O
ATOM 4 OP2 C A2468 -119.707 -45.253 -45.830 1.00 11.54 O
ATOM 5 O5' C A2468 -119.607 -47.722 -46.405 1.00 11.54 O
ATOM 6 C5' C A2468 -119.850 -48.844 -47.261 1.00 11.54 C
ATOM 7 C4' C A2468 -118.689 -49.818 -47.251 1.00 11.54 C
ATOM 8 O4' C A2468 -117.558 -49.233 -47.930 1.00 11.54 O
ATOM 9 C3' C A2468 -118.162 -50.201 -45.882 1.00 11.54 C
ATOM 10 O3' C A2468 -118.837 -51.311 -45.361 1.00 11.54 O
ATOM 11 C2' C A2468 -116.681 -50.464 -46.117 1.00 11.54 C
ATOM 12 O2' C A2468 -116.468 -51.784 -46.575 1.00 11.54 O
ATOM 13 C1' C A2468 -116.367 -49.523 -47.251 1.00 11.54 C
ATOM 14 N1 C A2468 -115.789 -48.271 -46.795 1.00 11.42 N
ATOM 15 C2 C A2468 -114.411 -48.285 -46.702 1.00 11.42 C
ATOM 16 O2 C A2468 -113.840 -49.376 -46.932 1.00 11.42 O
ATOM 17 N3 C A2468 -113.801 -47.126 -46.334 1.00 11.42 N
ATOM 18 C4 C A2468 -114.530 -46.030 -46.079 1.00 11.42 C
ATOM 19 N4 C A2468 -113.873 -44.928 -45.726 1.00 11.42 N
ATOM 20 C5 C A2468 -115.949 -46.008 -46.188 1.00 11.42 C
ATOM 21 C6 C A2468 -116.532 -47.150 -46.558 1.00 11.42 C
ATOM 22 P A A2469 -119.810 -51.138 -44.117 1.00 8.19 P
ATOM 23 OP1 A A2469 -120.653 -52.347 -44.082 1.00 8.19 O
ATOM 24 OP2 A A2469 -120.458 -49.812 -44.235 1.00 8.19 O
ATOM 25 O5' A A2469 -118.807 -51.129 -42.885 1.00 8.19 O
TER
ATOM 1 O3' U B2521 -105.178 -52.273 -50.760 1.00 0.01 O
ATOM 2 P G B2522 -105.526 -51.966 -52.289 1.00 2.37 P
ATOM 3 OP1 G B2522 -106.730 -52.760 -52.624 1.00 2.37 O
ATOM 4 OP2 G B2522 -104.290 -52.171 -53.099 1.00 2.37 O
ATOM 5 O5' G B2522 -105.891 -50.412 -52.212 1.00 2.37 O
ATOM 6 C5' G B2522 -104.879 -49.415 -52.303 1.00 2.37 C
ATOM 7 C4' G B2522 -104.891 -48.477 -51.118 1.00 2.37 C
ATOM 8 O4' G B2522 -106.224 -48.350 -50.605 1.00 2.37 O
ATOM 9 C3' G B2522 -104.041 -48.899 -49.936 1.00 2.37 C
ATOM 10 O3' G B2522 -102.715 -48.403 -50.049 1.00 2.37 O
ATOM 11 C2' G B2522 -104.786 -48.345 -48.714 1.00 2.37 C
ATOM 12 O2' G B2522 -104.272 -47.073 -48.342 1.00 2.37 O
ATOM 13 C1' G B2522 -106.210 -48.160 -49.217 1.00 2.37 C
ATOM 14 N9 G B2522 -107.150 -49.113 -48.662 1.00 2.46 N
ATOM 15 C8 G B2522 -106.986 -50.445 -48.728 1.00 2.46 C
ATOM 16 N7 G B2522 -108.026 -51.093 -48.289 1.00 2.46 N
ATOM 17 C5 G B2522 -108.943 -50.118 -47.976 1.00 2.46 C
ATOM 18 C6 G B2522 -110.247 -50.267 -47.477 1.00 2.46 C
ATOM 19 O6 G B2522 -110.864 -51.312 -47.183 1.00 2.46 O
ATOM 20 N1 G B2522 -110.832 -49.025 -47.307 1.00 2.46 N
ATOM 21 C2 G B2522 -110.249 -47.829 -47.578 1.00 2.46 C
ATOM 22 N2 G B2522 -111.024 -46.771 -47.319 1.00 2.46 N
ATOM 23 N3 G B2522 -109.029 -47.685 -48.050 1.00 2.46 N
ATOM 24 C4 G B2522 -108.432 -48.876 -48.226 1.00 2.46 C
ATOM 25 P A B2523 -101.467 -49.366 -49.881 1.00 0.01 P
ATOM 26 OP1 A B2523 -101.614 -50.009 -48.571 1.00 0.01 O
ATOM 27 OP2 A B2523 -100.253 -48.568 -50.154 1.00 0.01 O
ATOM 28 O5' A B2523 -101.684 -50.419 -51.046 1.00 0.01 O
TER
ATOM 2 P C A2468 -120.391 -46.334 -46.600 1.00 11.54 P
ATOM 3 OP1 C A2468 -121.840 -46.539 -46.391 1.00 11.54 O
ATOM 4 OP2 C A2468 -119.707 -45.253 -45.830 1.00 11.54 O
ATOM 5 O5' C A2468 -119.607 -47.722 -46.405 1.00 11.54 O
ATOM 6 C5' C A2468 -119.850 -48.844 -47.261 1.00 11.54 C
ATOM 7 C4' C A2468 -118.689 -49.818 -47.251 1.00 11.54 C
ATOM 8 O4' C A2468 -117.558 -49.233 -47.930 1.00 11.54 O
ATOM 9 C3' C A2468 -118.162 -50.201 -45.882 1.00 11.54 C
ATOM 10 O3' C A2468 -118.837 -51.311 -45.361 1.00 11.54 O
ATOM 11 C2' C A2468 -116.681 -50.464 -46.117 1.00 11.54 C
ATOM 12 O2' C A2468 -116.468 -51.784 -46.575 1.00 11.54 O
ATOM 13 C1' C A2468 -116.367 -49.523 -47.251 1.00 11.54 C
ATOM 14 N1 C A2468 -115.789 -48.271 -46.795 1.00 11.42 N
ATOM 15 C2 C A2468 -114.411 -48.285 -46.702 1.00 11.42 C
ATOM 16 O2 C A2468 -113.840 -49.376 -46.932 1.00 11.42 O
ATOM 17 N3 C A2468 -113.801 -47.126 -46.334 1.00 11.42 N
ATOM 18 C4 C A2468 -114.530 -46.030 -46.079 1.00 11.42 C
ATOM 19 N4 C A2468 -113.873 -44.928 -45.726 1.00 11.42 N
ATOM 20 C5 C A2468 -115.949 -46.008 -46.188 1.00 11.42 C
ATOM 21 C6 C A2468 -116.532 -47.150 -46.558 1.00 11.42 C
ATOM 22 P A A2469 -119.810 -51.138 -44.117 1.00 8.19 P
ATOM 23 OP1 A A2469 -120.653 -52.347 -44.082 1.00 8.19 O
ATOM 24 OP2 A A2469 -120.458 -49.812 -44.235 1.00 8.19 O
ATOM 25 O5' A A2469 -118.807 -51.129 -42.885 1.00 8.19 O
TER
ATOM 1 O3' U B2521 -105.178 -52.273 -50.760 1.00 0.01 O
ATOM 2 P G B2522 -105.526 -51.966 -52.289 1.00 2.37 P
ATOM 3 OP1 G B2522 -106.730 -52.760 -52.624 1.00 2.37 O
ATOM 4 OP2 G B2522 -104.290 -52.171 -53.099 1.00 2.37 O
ATOM 5 O5' G B2522 -105.891 -50.412 -52.212 1.00 2.37 O
ATOM 6 C5' G B2522 -104.879 -49.415 -52.303 1.00 2.37 C
ATOM 7 C4' G B2522 -104.891 -48.477 -51.118 1.00 2.37 C
ATOM 8 O4' G B2522 -106.224 -48.350 -50.605 1.00 2.37 O
ATOM 9 C3' G B2522 -104.041 -48.899 -49.936 1.00 2.37 C
ATOM 10 O3' G B2522 -102.715 -48.403 -50.049 1.00 2.37 O
ATOM 11 C2' G B2522 -104.786 -48.345 -48.714 1.00 2.37 C
ATOM 12 O2' G B2522 -104.272 -47.073 -48.342 1.00 2.37 O
ATOM 13 C1' G B2522 -106.210 -48.160 -49.217 1.00 2.37 C
ATOM 14 N9 G B2522 -107.150 -49.113 -48.662 1.00 2.46 N
ATOM 15 C8 G B2522 -106.986 -50.445 -48.728 1.00 2.46 C
ATOM 16 N7 G B2522 -108.026 -51.093 -48.289 1.00 2.46 N
ATOM 17 C5 G B2522 -108.943 -50.118 -47.976 1.00 2.46 C
ATOM 18 C6 G B2522 -110.247 -50.267 -47.477 1.00 2.46 C
ATOM 19 O6 G B2522 -110.864 -51.312 -47.183 1.00 2.46 O
ATOM 20 N1 G B2522 -110.832 -49.025 -47.307 1.00 2.46 N
ATOM 21 C2 G B2522 -110.249 -47.829 -47.578 1.00 2.46 C
ATOM 22 N2 G B2522 -111.024 -46.771 -47.319 1.00 2.46 N
ATOM 23 N3 G B2522 -109.029 -47.685 -48.050 1.00 2.46 N
ATOM 24 C4 G B2522 -108.432 -48.876 -48.226 1.00 2.46 C
ATOM 25 P A B2523 -101.467 -49.366 -49.881 1.00 0.01 P
ATOM 26 OP1 A B2523 -101.614 -50.009 -48.571 1.00 0.01 O
ATOM 27 OP2 A B2523 -100.253 -48.568 -50.154 1.00 0.01 O
ATOM 28 O5' A B2523 -101.684 -50.419 -51.046 1.00 0.01 O
TER
Atoms:
C2: (-114.411,-48.285,-46.702)
OP1: (-121.840,-46.539,-46.391)
OP2: (-119.707,-45.253,-45.830)
C4: (-114.530,-46.030,-46.079)
O5': (-119.607,-47.722,-46.405)
C3': (-118.162,-50.201,-45.882)
C1': (-116.367,-49.523,-47.251)
O4': (-117.558,-49.233,-47.930)
C5': (-119.850,-48.844,-47.261)
P: (-120.391,-46.334,-46.600)
O2: (-113.840,-49.376,-46.932)
C4': (-118.689,-49.818,-47.251)
C2': (-116.681,-50.464,-46.117)
O2': (-116.468,-51.784,-46.575)
N1: (-115.789,-48.271,-46.795)
N3: (-113.801,-47.126,-46.334)
N4: (-113.873,-44.928,-45.726)
C6: (-116.532,-47.150,-46.558)
C5: (-115.949,-46.008,-46.188)
O3': (-118.837,-51.311,-45.361)
OP1: (-121.840,-46.539,-46.391)
OP2: (-119.707,-45.253,-45.830)
C4: (-114.530,-46.030,-46.079)
O5': (-119.607,-47.722,-46.405)
C3': (-118.162,-50.201,-45.882)
C1': (-116.367,-49.523,-47.251)
O4': (-117.558,-49.233,-47.930)
C5': (-119.850,-48.844,-47.261)
P: (-120.391,-46.334,-46.600)
O2: (-113.840,-49.376,-46.932)
C4': (-118.689,-49.818,-47.251)
C2': (-116.681,-50.464,-46.117)
O2': (-116.468,-51.784,-46.575)
N1: (-115.789,-48.271,-46.795)
N3: (-113.801,-47.126,-46.334)
N4: (-113.873,-44.928,-45.726)
C6: (-116.532,-47.150,-46.558)
C5: (-115.949,-46.008,-46.188)
O3': (-118.837,-51.311,-45.361)
OP1: (-106.730,-52.760,-52.624)
OP2: (-104.290,-52.171,-53.099)
C3': (-104.041,-48.899,-49.936)
C1': (-106.210,-48.160,-49.217)
C5': (-104.879,-49.415,-52.303)
O6: (-110.864,-51.312,-47.183)
O4': (-106.224,-48.350,-50.605)
C8: (-106.986,-50.445,-48.728)
C2: (-110.249,-47.829,-47.578)
C6: (-110.247,-50.267,-47.477)
C5: (-108.943,-50.118,-47.976)
C4: (-108.432,-48.876,-48.226)
P: (-105.526,-51.966,-52.289)
C4': (-104.891,-48.477,-51.118)
C2': (-104.786,-48.345,-48.714)
O2': (-104.272,-47.073,-48.342)
N1: (-110.832,-49.025,-47.307)
N2: (-111.024,-46.771,-47.319)
N3: (-109.029,-47.685,-48.050)
N7: (-108.026,-51.093,-48.289)
N9: (-107.150,-49.113,-48.662)
O5': (-105.891,-50.412,-52.212)
O3': (-102.715,-48.403,-50.049)
OP2: (-104.290,-52.171,-53.099)
C3': (-104.041,-48.899,-49.936)
C1': (-106.210,-48.160,-49.217)
C5': (-104.879,-49.415,-52.303)
O6: (-110.864,-51.312,-47.183)
O4': (-106.224,-48.350,-50.605)
C8: (-106.986,-50.445,-48.728)
C2: (-110.249,-47.829,-47.578)
C6: (-110.247,-50.267,-47.477)
C5: (-108.943,-50.118,-47.976)
C4: (-108.432,-48.876,-48.226)
P: (-105.526,-51.966,-52.289)
C4': (-104.891,-48.477,-51.118)
C2': (-104.786,-48.345,-48.714)
O2': (-104.272,-47.073,-48.342)
N1: (-110.832,-49.025,-47.307)
N2: (-111.024,-46.771,-47.319)
N3: (-109.029,-47.685,-48.050)
N7: (-108.026,-51.093,-48.289)
N9: (-107.150,-49.113,-48.662)
O5': (-105.891,-50.412,-52.212)
O3': (-102.715,-48.403,-50.049)
Image (generated by PyMOL):