Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12251:12255
Extra
PDB:
ATOM 1 O3' A A2250 5.175 -64.166 123.912 1.00200.61 O
ATOM 2 P C A2251 5.392 -65.764 123.809 1.00190.21 P
ATOM 3 OP1 C A2251 5.556 -66.082 122.365 1.00189.84 O
ATOM 4 OP2 C A2251 4.280 -66.407 124.554 1.00190.78 O
ATOM 5 O5' C A2251 6.789 -66.002 124.582 1.00190.40 O
ATOM 6 C5' C A2251 6.928 -65.776 125.997 1.00190.78 C
ATOM 7 C4' C A2251 7.945 -66.712 126.627 1.00191.20 C
ATOM 8 O4' C A2251 8.279 -66.254 127.978 1.00191.49 O
ATOM 9 C3' C A2251 7.495 -68.176 126.774 1.00191.79 C
ATOM 10 O3' C A2251 8.553 -69.058 126.388 1.00191.86 O
ATOM 11 C2' C A2251 7.238 -68.311 128.275 1.00192.38 C
ATOM 12 O2' C A2251 7.372 -69.616 128.799 1.00193.00 O
ATOM 13 C1' C A2251 8.282 -67.374 128.842 1.00192.17 C
ATOM 14 N1 C A2251 7.998 -66.957 130.226 1.00192.55 N
ATOM 15 C2 C A2251 6.925 -66.124 130.568 1.00192.50 C
ATOM 16 O2 C A2251 6.200 -65.621 129.689 1.00192.09 O
ATOM 17 N3 C A2251 6.730 -65.861 131.884 1.00192.92 N
ATOM 18 C4 C A2251 7.521 -66.408 132.820 1.00193.38 C
ATOM 19 N4 C A2251 7.287 -66.109 134.100 1.00193.79 N
ATOM 20 C5 C A2251 8.592 -67.284 132.494 1.00193.45 C
ATOM 21 C6 C A2251 8.770 -67.537 131.197 1.00193.03 C
ATOM 22 P A A2252 8.294 -70.652 126.269 1.00218.52 P
ATOM 23 OP1 A A2252 8.973 -71.286 127.432 1.00219.08 O
ATOM 24 OP2 A A2252 8.706 -71.057 124.901 1.00218.17 O
ATOM 25 O5' A A2252 6.695 -70.791 126.429 1.00218.77 O
TER
ATOM 1 O3' A B2254 2.015 -64.087 140.635 1.00242.59 O
ATOM 2 P G B2255 2.418 -62.682 141.329 1.00224.73 P
ATOM 3 OP1 G B2255 2.432 -62.909 142.796 1.00225.44 O
ATOM 4 OP2 G B2255 1.511 -61.641 140.778 1.00224.29 O
ATOM 5 O5' G B2255 3.907 -62.436 140.808 1.00224.28 O
ATOM 6 C5' G B2255 4.456 -61.119 140.736 1.00223.80 C
ATOM 7 C4' G B2255 5.576 -61.032 139.723 1.00223.24 C
ATOM 8 O4' G B2255 5.223 -61.829 138.558 1.00223.01 O
ATOM 9 C3' G B2255 5.878 -59.624 139.205 1.00222.59 C
ATOM 10 O3' G B2255 7.285 -59.490 138.949 1.00222.31 O
ATOM 11 C2' G B2255 5.100 -59.575 137.892 1.00222.10 C
ATOM 12 O2' G B2255 5.599 -58.654 136.947 1.00221.41 O
ATOM 13 C1' G B2255 5.221 -61.017 137.400 1.00222.30 C
ATOM 14 N9 G B2255 4.117 -61.452 136.529 1.00222.18 N
ATOM 15 C8 G B2255 2.772 -61.246 136.745 1.00222.35 C
ATOM 16 N7 G B2255 2.006 -61.739 135.809 1.00222.21 N
ATOM 17 C5 G B2255 2.894 -62.313 134.908 1.00221.93 C
ATOM 18 C6 G B2255 2.642 -63.000 133.687 1.00221.69 C
ATOM 19 O6 G B2255 1.557 -63.249 133.144 1.00221.68 O
ATOM 20 N1 G B2255 3.822 -63.417 133.082 1.00221.45 N
ATOM 21 C2 G B2255 5.079 -63.201 133.584 1.00221.45 C
ATOM 22 N2 G B2255 6.081 -63.688 132.844 1.00221.21 N
ATOM 23 N3 G B2255 5.335 -62.565 134.719 1.00221.67 N
ATOM 24 C4 G B2255 4.202 -62.146 135.333 1.00221.90 C
ATOM 25 P U B2256 8.327 -59.507 140.177 1.00194.90 P
ATOM 26 OP1 U B2256 8.774 -60.911 140.341 1.00195.34 O
ATOM 27 OP2 U B2256 7.657 -58.839 141.320 1.00195.27 O
ATOM 28 O5' U B2256 9.551 -58.607 139.665 1.00194.33 O
TER
ATOM 2 P C A2251 5.392 -65.764 123.809 1.00190.21 P
ATOM 3 OP1 C A2251 5.556 -66.082 122.365 1.00189.84 O
ATOM 4 OP2 C A2251 4.280 -66.407 124.554 1.00190.78 O
ATOM 5 O5' C A2251 6.789 -66.002 124.582 1.00190.40 O
ATOM 6 C5' C A2251 6.928 -65.776 125.997 1.00190.78 C
ATOM 7 C4' C A2251 7.945 -66.712 126.627 1.00191.20 C
ATOM 8 O4' C A2251 8.279 -66.254 127.978 1.00191.49 O
ATOM 9 C3' C A2251 7.495 -68.176 126.774 1.00191.79 C
ATOM 10 O3' C A2251 8.553 -69.058 126.388 1.00191.86 O
ATOM 11 C2' C A2251 7.238 -68.311 128.275 1.00192.38 C
ATOM 12 O2' C A2251 7.372 -69.616 128.799 1.00193.00 O
ATOM 13 C1' C A2251 8.282 -67.374 128.842 1.00192.17 C
ATOM 14 N1 C A2251 7.998 -66.957 130.226 1.00192.55 N
ATOM 15 C2 C A2251 6.925 -66.124 130.568 1.00192.50 C
ATOM 16 O2 C A2251 6.200 -65.621 129.689 1.00192.09 O
ATOM 17 N3 C A2251 6.730 -65.861 131.884 1.00192.92 N
ATOM 18 C4 C A2251 7.521 -66.408 132.820 1.00193.38 C
ATOM 19 N4 C A2251 7.287 -66.109 134.100 1.00193.79 N
ATOM 20 C5 C A2251 8.592 -67.284 132.494 1.00193.45 C
ATOM 21 C6 C A2251 8.770 -67.537 131.197 1.00193.03 C
ATOM 22 P A A2252 8.294 -70.652 126.269 1.00218.52 P
ATOM 23 OP1 A A2252 8.973 -71.286 127.432 1.00219.08 O
ATOM 24 OP2 A A2252 8.706 -71.057 124.901 1.00218.17 O
ATOM 25 O5' A A2252 6.695 -70.791 126.429 1.00218.77 O
TER
ATOM 1 O3' A B2254 2.015 -64.087 140.635 1.00242.59 O
ATOM 2 P G B2255 2.418 -62.682 141.329 1.00224.73 P
ATOM 3 OP1 G B2255 2.432 -62.909 142.796 1.00225.44 O
ATOM 4 OP2 G B2255 1.511 -61.641 140.778 1.00224.29 O
ATOM 5 O5' G B2255 3.907 -62.436 140.808 1.00224.28 O
ATOM 6 C5' G B2255 4.456 -61.119 140.736 1.00223.80 C
ATOM 7 C4' G B2255 5.576 -61.032 139.723 1.00223.24 C
ATOM 8 O4' G B2255 5.223 -61.829 138.558 1.00223.01 O
ATOM 9 C3' G B2255 5.878 -59.624 139.205 1.00222.59 C
ATOM 10 O3' G B2255 7.285 -59.490 138.949 1.00222.31 O
ATOM 11 C2' G B2255 5.100 -59.575 137.892 1.00222.10 C
ATOM 12 O2' G B2255 5.599 -58.654 136.947 1.00221.41 O
ATOM 13 C1' G B2255 5.221 -61.017 137.400 1.00222.30 C
ATOM 14 N9 G B2255 4.117 -61.452 136.529 1.00222.18 N
ATOM 15 C8 G B2255 2.772 -61.246 136.745 1.00222.35 C
ATOM 16 N7 G B2255 2.006 -61.739 135.809 1.00222.21 N
ATOM 17 C5 G B2255 2.894 -62.313 134.908 1.00221.93 C
ATOM 18 C6 G B2255 2.642 -63.000 133.687 1.00221.69 C
ATOM 19 O6 G B2255 1.557 -63.249 133.144 1.00221.68 O
ATOM 20 N1 G B2255 3.822 -63.417 133.082 1.00221.45 N
ATOM 21 C2 G B2255 5.079 -63.201 133.584 1.00221.45 C
ATOM 22 N2 G B2255 6.081 -63.688 132.844 1.00221.21 N
ATOM 23 N3 G B2255 5.335 -62.565 134.719 1.00221.67 N
ATOM 24 C4 G B2255 4.202 -62.146 135.333 1.00221.90 C
ATOM 25 P U B2256 8.327 -59.507 140.177 1.00194.90 P
ATOM 26 OP1 U B2256 8.774 -60.911 140.341 1.00195.34 O
ATOM 27 OP2 U B2256 7.657 -58.839 141.320 1.00195.27 O
ATOM 28 O5' U B2256 9.551 -58.607 139.665 1.00194.33 O
TER
Atoms:
C2: (6.925,-66.124,130.568)
OP1: (5.556,-66.082,122.365)
OP2: (4.280,-66.407,124.554)
C4: (7.521,-66.408,132.820)
O5': (6.789,-66.002,124.582)
C3': (7.495,-68.176,126.774)
C1': (8.282,-67.374,128.842)
O4': (8.279,-66.254,127.978)
C5': (6.928,-65.776,125.997)
P: (5.392,-65.764,123.809)
O2: (6.200,-65.621,129.689)
C4': (7.945,-66.712,126.627)
C2': (7.238,-68.311,128.275)
O2': (7.372,-69.616,128.799)
N1: (7.998,-66.957,130.226)
N3: (6.730,-65.861,131.884)
N4: (7.287,-66.109,134.100)
C6: (8.770,-67.537,131.197)
C5: (8.592,-67.284,132.494)
O3': (8.553,-69.058,126.388)
OP1: (5.556,-66.082,122.365)
OP2: (4.280,-66.407,124.554)
C4: (7.521,-66.408,132.820)
O5': (6.789,-66.002,124.582)
C3': (7.495,-68.176,126.774)
C1': (8.282,-67.374,128.842)
O4': (8.279,-66.254,127.978)
C5': (6.928,-65.776,125.997)
P: (5.392,-65.764,123.809)
O2: (6.200,-65.621,129.689)
C4': (7.945,-66.712,126.627)
C2': (7.238,-68.311,128.275)
O2': (7.372,-69.616,128.799)
N1: (7.998,-66.957,130.226)
N3: (6.730,-65.861,131.884)
N4: (7.287,-66.109,134.100)
C6: (8.770,-67.537,131.197)
C5: (8.592,-67.284,132.494)
O3': (8.553,-69.058,126.388)
OP1: (2.432,-62.909,142.796)
OP2: (1.511,-61.641,140.778)
C3': (5.878,-59.624,139.205)
C1': (5.221,-61.017,137.400)
C5': (4.456,-61.119,140.736)
O6: (1.557,-63.249,133.144)
O4': (5.223,-61.829,138.558)
C8: (2.772,-61.246,136.745)
C2: (5.079,-63.201,133.584)
C6: (2.642,-63.000,133.687)
C5: (2.894,-62.313,134.908)
C4: (4.202,-62.146,135.333)
P: (2.418,-62.682,141.329)
C4': (5.576,-61.032,139.723)
C2': (5.100,-59.575,137.892)
O2': (5.599,-58.654,136.947)
N1: (3.822,-63.417,133.082)
N2: (6.081,-63.688,132.844)
N3: (5.335,-62.565,134.719)
N7: (2.006,-61.739,135.809)
N9: (4.117,-61.452,136.529)
O5': (3.907,-62.436,140.808)
O3': (7.285,-59.490,138.949)
OP2: (1.511,-61.641,140.778)
C3': (5.878,-59.624,139.205)
C1': (5.221,-61.017,137.400)
C5': (4.456,-61.119,140.736)
O6: (1.557,-63.249,133.144)
O4': (5.223,-61.829,138.558)
C8: (2.772,-61.246,136.745)
C2: (5.079,-63.201,133.584)
C6: (2.642,-63.000,133.687)
C5: (2.894,-62.313,134.908)
C4: (4.202,-62.146,135.333)
P: (2.418,-62.682,141.329)
C4': (5.576,-61.032,139.723)
C2': (5.100,-59.575,137.892)
O2': (5.599,-58.654,136.947)
N1: (3.822,-63.417,133.082)
N2: (6.081,-63.688,132.844)
N3: (5.335,-62.565,134.719)
N7: (2.006,-61.739,135.809)
N9: (4.117,-61.452,136.529)
O5': (3.907,-62.436,140.808)
O3': (7.285,-59.490,138.949)
Image (generated by PyMOL):