Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:030:0430
Extra
PDB:
ATOM 1 O3' G A 29 47.867 124.734 22.785 1.00 47.42 O
ATOM 2 P C A 30 49.387 124.567 22.272 1.00 49.14 P
ATOM 3 OP1 C A 30 49.335 124.711 20.801 1.00 51.05 O
ATOM 4 OP2 C A 30 49.984 123.339 22.861 1.00 47.39 O
ATOM 5 O5' C A 30 50.157 125.836 22.859 1.00 48.29 O
ATOM 6 C5' C A 30 49.819 127.179 22.448 1.00 48.46 C
ATOM 7 C4' C A 30 50.470 128.190 23.371 1.00 47.31 C
ATOM 8 O4' C A 30 50.028 127.934 24.731 1.00 48.12 O
ATOM 9 C3' C A 30 51.990 128.138 23.450 1.00 47.90 C
ATOM 10 O3' C A 30 52.600 128.910 22.415 1.00 45.69 O
ATOM 11 C2' C A 30 52.268 128.714 24.833 1.00 48.22 C
ATOM 12 O2' C A 30 52.194 130.127 24.850 1.00 47.94 O
ATOM 13 C1' C A 30 51.103 128.134 25.639 1.00 48.52 C
ATOM 14 N1 C A 30 51.403 126.841 26.294 1.00 49.07 N
ATOM 15 C2 C A 30 52.063 126.831 27.541 1.00 49.37 C
ATOM 16 O2 C A 30 52.402 127.907 28.061 1.00 49.95 O
ATOM 17 N3 C A 30 52.317 125.643 28.142 1.00 49.57 N
ATOM 18 C4 C A 30 51.955 124.502 27.548 1.00 50.28 C
ATOM 19 N4 C A 30 52.228 123.355 28.171 1.00 49.89 N
ATOM 20 C5 C A 30 51.297 124.484 26.284 1.00 50.34 C
ATOM 21 C6 C A 30 51.042 125.662 25.700 1.00 49.86 C
ATOM 22 P G A 31 54.151 128.676 22.044 1.00 45.39 P
ATOM 23 OP1 G A 31 54.506 129.722 21.051 1.00 46.35 O
ATOM 24 OP2 G A 31 54.361 127.244 21.710 1.00 42.98 O
ATOM 25 O5' G A 31 54.939 129.004 23.390 1.00 43.92 O
TER
ATOM 1 O3' A B 429 53.934 128.084 37.105 1.00 49.93 O
ATOM 2 P A B 430 53.262 129.170 38.071 1.00 49.70 P
ATOM 3 OP1 A B 430 53.922 129.040 39.398 1.00 51.01 O
ATOM 4 OP2 A B 430 51.791 129.023 37.973 1.00 50.09 O
ATOM 5 O5' A B 430 53.688 130.557 37.413 1.00 48.06 O
ATOM 6 C5' A B 430 54.844 131.289 37.881 1.00 47.07 C
ATOM 7 C4' A B 430 55.480 132.034 36.736 1.00 46.31 C
ATOM 8 O4' A B 430 56.197 131.105 35.884 1.00 45.98 O
ATOM 9 C3' A B 430 54.479 132.706 35.817 1.00 46.39 C
ATOM 10 O3' A B 430 54.091 133.974 36.319 1.00 47.39 O
ATOM 11 C2' A B 430 55.233 132.787 34.500 1.00 46.61 C
ATOM 12 O2' A B 430 56.121 133.885 34.465 1.00 48.36 O
ATOM 13 C1' A B 430 56.026 131.475 34.524 1.00 46.02 C
ATOM 14 N9 A B 430 55.373 130.360 33.830 1.00 46.77 N
ATOM 15 C8 A B 430 54.853 129.219 34.392 1.00 46.96 C
ATOM 16 N7 A B 430 54.340 128.387 33.522 1.00 45.68 N
ATOM 17 C5 A B 430 54.530 129.019 32.305 1.00 45.84 C
ATOM 18 C6 A B 430 54.194 128.655 30.995 1.00 47.17 C
ATOM 19 N6 A B 430 53.563 127.525 30.678 1.00 48.08 N
ATOM 20 N1 A B 430 54.525 129.507 30.005 1.00 48.02 N
ATOM 21 C2 A B 430 55.140 130.650 30.324 1.00 46.56 C
ATOM 22 N3 A B 430 55.498 131.108 31.517 1.00 46.39 N
ATOM 23 C4 A B 430 55.163 130.235 32.478 1.00 46.10 C
ATOM 24 P C B 431 52.531 134.356 36.385 1.00 50.34 P
ATOM 25 OP1 C B 431 52.426 135.751 36.872 1.00 50.59 O
ATOM 26 OP2 C B 431 51.797 133.280 37.096 1.00 51.18 O
ATOM 27 O5' C B 431 52.086 134.318 34.857 1.00 50.85 O
TER
ATOM 2 P C A 30 49.387 124.567 22.272 1.00 49.14 P
ATOM 3 OP1 C A 30 49.335 124.711 20.801 1.00 51.05 O
ATOM 4 OP2 C A 30 49.984 123.339 22.861 1.00 47.39 O
ATOM 5 O5' C A 30 50.157 125.836 22.859 1.00 48.29 O
ATOM 6 C5' C A 30 49.819 127.179 22.448 1.00 48.46 C
ATOM 7 C4' C A 30 50.470 128.190 23.371 1.00 47.31 C
ATOM 8 O4' C A 30 50.028 127.934 24.731 1.00 48.12 O
ATOM 9 C3' C A 30 51.990 128.138 23.450 1.00 47.90 C
ATOM 10 O3' C A 30 52.600 128.910 22.415 1.00 45.69 O
ATOM 11 C2' C A 30 52.268 128.714 24.833 1.00 48.22 C
ATOM 12 O2' C A 30 52.194 130.127 24.850 1.00 47.94 O
ATOM 13 C1' C A 30 51.103 128.134 25.639 1.00 48.52 C
ATOM 14 N1 C A 30 51.403 126.841 26.294 1.00 49.07 N
ATOM 15 C2 C A 30 52.063 126.831 27.541 1.00 49.37 C
ATOM 16 O2 C A 30 52.402 127.907 28.061 1.00 49.95 O
ATOM 17 N3 C A 30 52.317 125.643 28.142 1.00 49.57 N
ATOM 18 C4 C A 30 51.955 124.502 27.548 1.00 50.28 C
ATOM 19 N4 C A 30 52.228 123.355 28.171 1.00 49.89 N
ATOM 20 C5 C A 30 51.297 124.484 26.284 1.00 50.34 C
ATOM 21 C6 C A 30 51.042 125.662 25.700 1.00 49.86 C
ATOM 22 P G A 31 54.151 128.676 22.044 1.00 45.39 P
ATOM 23 OP1 G A 31 54.506 129.722 21.051 1.00 46.35 O
ATOM 24 OP2 G A 31 54.361 127.244 21.710 1.00 42.98 O
ATOM 25 O5' G A 31 54.939 129.004 23.390 1.00 43.92 O
TER
ATOM 1 O3' A B 429 53.934 128.084 37.105 1.00 49.93 O
ATOM 2 P A B 430 53.262 129.170 38.071 1.00 49.70 P
ATOM 3 OP1 A B 430 53.922 129.040 39.398 1.00 51.01 O
ATOM 4 OP2 A B 430 51.791 129.023 37.973 1.00 50.09 O
ATOM 5 O5' A B 430 53.688 130.557 37.413 1.00 48.06 O
ATOM 6 C5' A B 430 54.844 131.289 37.881 1.00 47.07 C
ATOM 7 C4' A B 430 55.480 132.034 36.736 1.00 46.31 C
ATOM 8 O4' A B 430 56.197 131.105 35.884 1.00 45.98 O
ATOM 9 C3' A B 430 54.479 132.706 35.817 1.00 46.39 C
ATOM 10 O3' A B 430 54.091 133.974 36.319 1.00 47.39 O
ATOM 11 C2' A B 430 55.233 132.787 34.500 1.00 46.61 C
ATOM 12 O2' A B 430 56.121 133.885 34.465 1.00 48.36 O
ATOM 13 C1' A B 430 56.026 131.475 34.524 1.00 46.02 C
ATOM 14 N9 A B 430 55.373 130.360 33.830 1.00 46.77 N
ATOM 15 C8 A B 430 54.853 129.219 34.392 1.00 46.96 C
ATOM 16 N7 A B 430 54.340 128.387 33.522 1.00 45.68 N
ATOM 17 C5 A B 430 54.530 129.019 32.305 1.00 45.84 C
ATOM 18 C6 A B 430 54.194 128.655 30.995 1.00 47.17 C
ATOM 19 N6 A B 430 53.563 127.525 30.678 1.00 48.08 N
ATOM 20 N1 A B 430 54.525 129.507 30.005 1.00 48.02 N
ATOM 21 C2 A B 430 55.140 130.650 30.324 1.00 46.56 C
ATOM 22 N3 A B 430 55.498 131.108 31.517 1.00 46.39 N
ATOM 23 C4 A B 430 55.163 130.235 32.478 1.00 46.10 C
ATOM 24 P C B 431 52.531 134.356 36.385 1.00 50.34 P
ATOM 25 OP1 C B 431 52.426 135.751 36.872 1.00 50.59 O
ATOM 26 OP2 C B 431 51.797 133.280 37.096 1.00 51.18 O
ATOM 27 O5' C B 431 52.086 134.318 34.857 1.00 50.85 O
TER
Atoms:
C2: (52.063,126.831,27.541)
OP1: (49.335,124.711,20.801)
OP2: (49.984,123.339,22.861)
C4: (51.955,124.502,27.548)
O5': (50.157,125.836,22.859)
C3': (51.990,128.138,23.450)
C1': (51.103,128.134,25.639)
O4': (50.028,127.934,24.731)
C5': (49.819,127.179,22.448)
P: (49.387,124.567,22.272)
O2: (52.402,127.907,28.061)
C4': (50.470,128.190,23.371)
C2': (52.268,128.714,24.833)
O2': (52.194,130.127,24.850)
N1: (51.403,126.841,26.294)
N3: (52.317,125.643,28.142)
N4: (52.228,123.355,28.171)
C6: (51.042,125.662,25.700)
C5: (51.297,124.484,26.284)
O3': (52.600,128.910,22.415)
OP1: (49.335,124.711,20.801)
OP2: (49.984,123.339,22.861)
C4: (51.955,124.502,27.548)
O5': (50.157,125.836,22.859)
C3': (51.990,128.138,23.450)
C1': (51.103,128.134,25.639)
O4': (50.028,127.934,24.731)
C5': (49.819,127.179,22.448)
P: (49.387,124.567,22.272)
O2: (52.402,127.907,28.061)
C4': (50.470,128.190,23.371)
C2': (52.268,128.714,24.833)
O2': (52.194,130.127,24.850)
N1: (51.403,126.841,26.294)
N3: (52.317,125.643,28.142)
N4: (52.228,123.355,28.171)
C6: (51.042,125.662,25.700)
C5: (51.297,124.484,26.284)
O3': (52.600,128.910,22.415)
OP1: (53.922,129.040,39.398)
OP2: (51.791,129.023,37.973)
C3': (54.479,132.706,35.817)
C1': (56.026,131.475,34.524)
C5': (54.844,131.289,37.881)
O4': (56.197,131.105,35.884)
C8: (54.853,129.219,34.392)
O2': (56.121,133.885,34.465)
C6: (54.194,128.655,30.995)
C5: (54.530,129.019,32.305)
C4: (55.163,130.235,32.478)
P: (53.262,129.170,38.071)
C4': (55.480,132.034,36.736)
C2': (55.233,132.787,34.500)
C2: (55.140,130.650,30.324)
N1: (54.525,129.507,30.005)
N3: (55.498,131.108,31.517)
N6: (53.563,127.525,30.678)
N7: (54.340,128.387,33.522)
N9: (55.373,130.360,33.830)
O5': (53.688,130.557,37.413)
O3': (54.091,133.974,36.319)
OP2: (51.791,129.023,37.973)
C3': (54.479,132.706,35.817)
C1': (56.026,131.475,34.524)
C5': (54.844,131.289,37.881)
O4': (56.197,131.105,35.884)
C8: (54.853,129.219,34.392)
O2': (56.121,133.885,34.465)
C6: (54.194,128.655,30.995)
C5: (54.530,129.019,32.305)
C4: (55.163,130.235,32.478)
P: (53.262,129.170,38.071)
C4': (55.480,132.034,36.736)
C2': (55.233,132.787,34.500)
C2: (55.140,130.650,30.324)
N1: (54.525,129.507,30.005)
N3: (55.498,131.108,31.517)
N6: (53.563,127.525,30.678)
N7: (54.340,128.387,33.522)
N9: (55.373,130.360,33.830)
O5': (53.688,130.557,37.413)
O3': (54.091,133.974,36.319)
Image (generated by PyMOL):