Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A1237:A1238
Extra
PDB:
ATOM 1 O3' C A1236 10.427 87.292 59.030 1.00 64.04 O
ATOM 2 P A A1237 10.465 87.268 60.625 1.00 64.81 P
ATOM 3 OP1 A A1237 11.673 86.523 61.058 1.00 63.83 O
ATOM 4 OP2 A A1237 9.127 86.847 61.107 1.00 65.42 O
ATOM 5 O5' A A1237 10.679 88.793 61.012 1.00 67.95 O
ATOM 6 C5' A A1237 11.962 89.415 60.854 1.00 71.34 C
ATOM 7 C4' A A1237 11.877 90.852 61.264 1.00 73.61 C
ATOM 8 O4' A A1237 10.949 91.521 60.381 1.00 73.40 O
ATOM 9 C3' A A1237 11.301 91.064 62.653 1.00 76.19 C
ATOM 10 O3' A A1237 12.317 90.945 63.648 1.00 81.99 O
ATOM 11 C2' A A1237 10.729 92.471 62.553 1.00 75.14 C
ATOM 12 O2' A A1237 11.700 93.484 62.691 1.00 75.61 O
ATOM 13 C1' A A1237 10.222 92.489 61.108 1.00 73.81 C
ATOM 14 N9 A A1237 8.797 92.202 60.966 1.00 72.52 N
ATOM 15 C8 A A1237 8.157 90.989 60.953 1.00 71.34 C
ATOM 16 N7 A A1237 6.856 91.082 60.860 1.00 70.96 N
ATOM 17 C5 A A1237 6.622 92.449 60.796 1.00 72.11 C
ATOM 18 C6 A A1237 5.437 93.205 60.709 1.00 72.48 C
ATOM 19 N6 A A1237 4.214 92.667 60.698 1.00 73.31 N
ATOM 20 N1 A A1237 5.553 94.550 60.648 1.00 72.78 N
ATOM 21 C2 A A1237 6.779 95.089 60.692 1.00 72.73 C
ATOM 22 N3 A A1237 7.964 94.485 60.792 1.00 72.75 N
ATOM 23 C4 A A1237 7.811 93.149 60.839 1.00 72.35 C
ATOM 24 P U A1238 11.964 90.335 65.092 1.00 86.42 P
ATOM 25 OP1 U A1238 12.087 88.853 64.976 1.00 84.75 O
ATOM 26 OP2 U A1238 10.681 90.937 65.536 1.00 86.20 O
ATOM 27 O5' U A1238 13.134 90.882 66.035 1.00 91.48 O
TER
ATOM 1 O3' A B1237 12.317 90.945 63.648 1.00 81.99 O
ATOM 2 P U B1238 11.964 90.335 65.092 1.00 86.42 P
ATOM 3 OP1 U B1238 12.087 88.853 64.976 1.00 84.75 O
ATOM 4 OP2 U B1238 10.681 90.937 65.536 1.00 86.20 O
ATOM 5 O5' U B1238 13.134 90.882 66.035 1.00 91.48 O
ATOM 6 C5' U B1238 12.894 91.888 67.070 1.00 99.16 C
ATOM 7 C4' U B1238 13.718 93.144 66.803 1.00104.03 C
ATOM 8 O4' U B1238 14.948 92.750 66.131 1.00106.44 O
ATOM 9 C3' U B1238 13.076 94.166 65.867 1.00105.57 C
ATOM 10 O3' U B1238 12.321 95.125 66.597 1.00104.60 O
ATOM 11 C2' U B1238 14.272 94.845 65.214 1.00107.27 C
ATOM 12 O2' U B1238 14.804 95.888 66.007 1.00107.80 O
ATOM 13 C1' U B1238 15.266 93.681 65.101 1.00108.73 C
ATOM 14 N1 U B1238 15.282 92.965 63.804 1.00110.72 N
ATOM 15 C2 U B1238 15.355 93.711 62.621 1.00111.94 C
ATOM 16 O2 U B1238 15.418 94.936 62.598 1.00112.98 O
ATOM 17 N3 U B1238 15.359 92.966 61.465 1.00112.01 N
ATOM 18 C4 U B1238 15.308 91.590 61.355 1.00111.68 C
ATOM 19 O4 U B1238 15.300 91.071 60.236 1.00112.02 O
ATOM 20 C5 U B1238 15.246 90.892 62.604 1.00111.20 C
ATOM 21 C6 U B1238 15.234 91.581 63.753 1.00110.81 C
ATOM 22 P A B1239 10.742 95.236 66.371 1.00104.84 P
ATOM 23 OP1 A B1239 10.222 96.105 67.460 1.00104.93 O
ATOM 24 OP2 A B1239 10.214 93.859 66.223 1.00105.44 O
ATOM 25 O5' A B1239 10.589 95.970 64.965 1.00101.94 O
TER
ATOM 2 P A A1237 10.465 87.268 60.625 1.00 64.81 P
ATOM 3 OP1 A A1237 11.673 86.523 61.058 1.00 63.83 O
ATOM 4 OP2 A A1237 9.127 86.847 61.107 1.00 65.42 O
ATOM 5 O5' A A1237 10.679 88.793 61.012 1.00 67.95 O
ATOM 6 C5' A A1237 11.962 89.415 60.854 1.00 71.34 C
ATOM 7 C4' A A1237 11.877 90.852 61.264 1.00 73.61 C
ATOM 8 O4' A A1237 10.949 91.521 60.381 1.00 73.40 O
ATOM 9 C3' A A1237 11.301 91.064 62.653 1.00 76.19 C
ATOM 10 O3' A A1237 12.317 90.945 63.648 1.00 81.99 O
ATOM 11 C2' A A1237 10.729 92.471 62.553 1.00 75.14 C
ATOM 12 O2' A A1237 11.700 93.484 62.691 1.00 75.61 O
ATOM 13 C1' A A1237 10.222 92.489 61.108 1.00 73.81 C
ATOM 14 N9 A A1237 8.797 92.202 60.966 1.00 72.52 N
ATOM 15 C8 A A1237 8.157 90.989 60.953 1.00 71.34 C
ATOM 16 N7 A A1237 6.856 91.082 60.860 1.00 70.96 N
ATOM 17 C5 A A1237 6.622 92.449 60.796 1.00 72.11 C
ATOM 18 C6 A A1237 5.437 93.205 60.709 1.00 72.48 C
ATOM 19 N6 A A1237 4.214 92.667 60.698 1.00 73.31 N
ATOM 20 N1 A A1237 5.553 94.550 60.648 1.00 72.78 N
ATOM 21 C2 A A1237 6.779 95.089 60.692 1.00 72.73 C
ATOM 22 N3 A A1237 7.964 94.485 60.792 1.00 72.75 N
ATOM 23 C4 A A1237 7.811 93.149 60.839 1.00 72.35 C
ATOM 24 P U A1238 11.964 90.335 65.092 1.00 86.42 P
ATOM 25 OP1 U A1238 12.087 88.853 64.976 1.00 84.75 O
ATOM 26 OP2 U A1238 10.681 90.937 65.536 1.00 86.20 O
ATOM 27 O5' U A1238 13.134 90.882 66.035 1.00 91.48 O
TER
ATOM 1 O3' A B1237 12.317 90.945 63.648 1.00 81.99 O
ATOM 2 P U B1238 11.964 90.335 65.092 1.00 86.42 P
ATOM 3 OP1 U B1238 12.087 88.853 64.976 1.00 84.75 O
ATOM 4 OP2 U B1238 10.681 90.937 65.536 1.00 86.20 O
ATOM 5 O5' U B1238 13.134 90.882 66.035 1.00 91.48 O
ATOM 6 C5' U B1238 12.894 91.888 67.070 1.00 99.16 C
ATOM 7 C4' U B1238 13.718 93.144 66.803 1.00104.03 C
ATOM 8 O4' U B1238 14.948 92.750 66.131 1.00106.44 O
ATOM 9 C3' U B1238 13.076 94.166 65.867 1.00105.57 C
ATOM 10 O3' U B1238 12.321 95.125 66.597 1.00104.60 O
ATOM 11 C2' U B1238 14.272 94.845 65.214 1.00107.27 C
ATOM 12 O2' U B1238 14.804 95.888 66.007 1.00107.80 O
ATOM 13 C1' U B1238 15.266 93.681 65.101 1.00108.73 C
ATOM 14 N1 U B1238 15.282 92.965 63.804 1.00110.72 N
ATOM 15 C2 U B1238 15.355 93.711 62.621 1.00111.94 C
ATOM 16 O2 U B1238 15.418 94.936 62.598 1.00112.98 O
ATOM 17 N3 U B1238 15.359 92.966 61.465 1.00112.01 N
ATOM 18 C4 U B1238 15.308 91.590 61.355 1.00111.68 C
ATOM 19 O4 U B1238 15.300 91.071 60.236 1.00112.02 O
ATOM 20 C5 U B1238 15.246 90.892 62.604 1.00111.20 C
ATOM 21 C6 U B1238 15.234 91.581 63.753 1.00110.81 C
ATOM 22 P A B1239 10.742 95.236 66.371 1.00104.84 P
ATOM 23 OP1 A B1239 10.222 96.105 67.460 1.00104.93 O
ATOM 24 OP2 A B1239 10.214 93.859 66.223 1.00105.44 O
ATOM 25 O5' A B1239 10.589 95.970 64.965 1.00101.94 O
TER
Atoms:
OP1: (11.673,86.523,61.058)
OP2: (9.127,86.847,61.107)
C3': (11.301,91.064,62.653)
C1': (10.222,92.489,61.108)
C5': (11.962,89.415,60.854)
O4': (10.949,91.521,60.381)
C8: (8.157,90.989,60.953)
O2': (11.700,93.484,62.691)
C6: (5.437,93.205,60.709)
C5: (6.622,92.449,60.796)
C4: (7.811,93.149,60.839)
P: (10.465,87.268,60.625)
C4': (11.877,90.852,61.264)
C2': (10.729,92.471,62.553)
C2: (6.779,95.089,60.692)
N1: (5.553,94.550,60.648)
N3: (7.964,94.485,60.792)
N6: (4.214,92.667,60.698)
N7: (6.856,91.082,60.860)
N9: (8.797,92.202,60.966)
O5': (10.679,88.793,61.012)
O3': (12.317,90.945,63.648)
OP2: (9.127,86.847,61.107)
C3': (11.301,91.064,62.653)
C1': (10.222,92.489,61.108)
C5': (11.962,89.415,60.854)
O4': (10.949,91.521,60.381)
C8: (8.157,90.989,60.953)
O2': (11.700,93.484,62.691)
C6: (5.437,93.205,60.709)
C5: (6.622,92.449,60.796)
C4: (7.811,93.149,60.839)
P: (10.465,87.268,60.625)
C4': (11.877,90.852,61.264)
C2': (10.729,92.471,62.553)
C2: (6.779,95.089,60.692)
N1: (5.553,94.550,60.648)
N3: (7.964,94.485,60.792)
N6: (4.214,92.667,60.698)
N7: (6.856,91.082,60.860)
N9: (8.797,92.202,60.966)
O5': (10.679,88.793,61.012)
O3': (12.317,90.945,63.648)
C4: (15.308,91.590,61.355)
N3: (15.359,92.966,61.465)
OP1: (12.087,88.853,64.976)
OP2: (10.681,90.937,65.536)
C2: (15.355,93.711,62.621)
C1': (15.266,93.681,65.101)
C3': (13.076,94.166,65.867)
O5': (13.134,90.882,66.035)
O4': (14.948,92.750,66.131)
C5': (12.894,91.888,67.070)
P: (11.964,90.335,65.092)
C4': (13.718,93.144,66.803)
C2': (14.272,94.845,65.214)
O2': (14.804,95.888,66.007)
N1: (15.282,92.965,63.804)
O4: (15.300,91.071,60.236)
O2: (15.418,94.936,62.598)
C6: (15.234,91.581,63.753)
C5: (15.246,90.892,62.604)
O3': (12.321,95.125,66.597)
N3: (15.359,92.966,61.465)
OP1: (12.087,88.853,64.976)
OP2: (10.681,90.937,65.536)
C2: (15.355,93.711,62.621)
C1': (15.266,93.681,65.101)
C3': (13.076,94.166,65.867)
O5': (13.134,90.882,66.035)
O4': (14.948,92.750,66.131)
C5': (12.894,91.888,67.070)
P: (11.964,90.335,65.092)
C4': (13.718,93.144,66.803)
C2': (14.272,94.845,65.214)
O2': (14.804,95.888,66.007)
N1: (15.282,92.965,63.804)
O4: (15.300,91.071,60.236)
O2: (15.418,94.936,62.598)
C6: (15.234,91.581,63.753)
C5: (15.246,90.892,62.604)
O3': (12.321,95.125,66.597)
Image (generated by PyMOL):