Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01237:01238
Extra
PDB:
ATOM 1 O3' C A1236 10.319 87.275 58.718 1.00 56.40 O
ATOM 2 P A A1237 10.345 87.251 60.317 1.00 57.10 P
ATOM 3 OP1 A A1237 11.540 86.475 60.719 1.00 56.53 O
ATOM 4 OP2 A A1237 9.005 86.851 60.810 1.00 58.29 O
ATOM 5 O5' A A1237 10.568 88.774 60.718 1.00 61.01 O
ATOM 6 C5' A A1237 11.849 89.409 60.548 1.00 64.15 C
ATOM 7 C4' A A1237 11.763 90.850 60.970 1.00 66.88 C
ATOM 8 O4' A A1237 10.853 91.547 60.085 1.00 66.81 O
ATOM 9 C3' A A1237 11.171 91.061 62.351 1.00 70.07 C
ATOM 10 O3' A A1237 12.156 90.911 63.356 1.00 77.27 O
ATOM 11 C2' A A1237 10.625 92.478 62.265 1.00 68.64 C
ATOM 12 O2' A A1237 11.611 93.473 62.441 1.00 68.29 O
ATOM 13 C1' A A1237 10.115 92.507 60.823 1.00 67.94 C
ATOM 14 N9 A A1237 8.698 92.171 60.714 1.00 67.63 N
ATOM 15 C8 A A1237 8.115 90.931 60.763 1.00 67.60 C
ATOM 16 N7 A A1237 6.811 90.956 60.657 1.00 67.98 N
ATOM 17 C5 A A1237 6.514 92.304 60.525 1.00 68.49 C
ATOM 18 C6 A A1237 5.297 92.996 60.383 1.00 69.46 C
ATOM 19 N6 A A1237 4.103 92.398 60.353 1.00 69.33 N
ATOM 20 N1 A A1237 5.350 94.340 60.275 1.00 69.77 N
ATOM 21 C2 A A1237 6.549 94.938 60.312 1.00 69.82 C
ATOM 22 N3 A A1237 7.758 94.398 60.447 1.00 68.19 N
ATOM 23 C4 A A1237 7.668 93.063 60.550 1.00 68.05 C
ATOM 24 P U A1238 11.771 90.236 64.763 1.00 83.50 P
ATOM 25 OP1 U A1238 11.933 88.761 64.615 1.00 81.74 O
ATOM 26 OP2 U A1238 10.462 90.791 65.214 1.00 82.28 O
ATOM 27 O5' U A1238 12.927 90.764 65.732 1.00 89.08 O
TER
ATOM 1 O3' A B1237 12.156 90.911 63.356 1.00 77.27 O
ATOM 2 P U B1238 11.771 90.236 64.763 1.00 83.50 P
ATOM 3 OP1 U B1238 11.933 88.761 64.615 1.00 81.74 O
ATOM 4 OP2 U B1238 10.462 90.791 65.214 1.00 82.28 O
ATOM 5 O5' U B1238 12.927 90.764 65.732 1.00 89.08 O
ATOM 6 C5' U B1238 12.719 91.884 66.643 1.00 95.93 C
ATOM 7 C4' U B1238 13.638 93.047 66.291 1.00 99.58 C
ATOM 8 O4' U B1238 14.786 92.552 65.546 1.00100.82 O
ATOM 9 C3' U B1238 13.031 94.121 65.395 1.00100.96 C
ATOM 10 O3' U B1238 12.337 95.105 66.165 1.00100.95 O
ATOM 11 C2' U B1238 14.260 94.725 64.727 1.00102.06 C
ATOM 12 O2' U B1238 14.933 95.654 65.558 1.00102.27 O
ATOM 13 C1' U B1238 15.146 93.486 64.536 1.00102.75 C
ATOM 14 N1 U B1238 15.082 92.807 63.222 1.00103.87 N
ATOM 15 C2 U B1238 14.946 93.576 62.058 1.00104.53 C
ATOM 16 O2 U B1238 14.847 94.796 62.060 1.00105.33 O
ATOM 17 N3 U B1238 14.932 92.856 60.888 1.00104.49 N
ATOM 18 C4 U B1238 15.031 91.486 60.747 1.00104.77 C
ATOM 19 O4 U B1238 15.029 90.993 59.616 1.00103.96 O
ATOM 20 C5 U B1238 15.153 90.765 61.979 1.00104.20 C
ATOM 21 C6 U B1238 15.173 91.428 63.140 1.00103.66 C
ATOM 22 P A B1239 10.730 95.179 66.119 1.00100.94 P
ATOM 23 OP1 A B1239 10.312 96.193 67.119 1.00101.56 O
ATOM 24 OP2 A B1239 10.198 93.793 66.216 1.00101.12 O
ATOM 25 O5' A B1239 10.392 95.758 64.673 1.00 97.48 O
TER
ATOM 2 P A A1237 10.345 87.251 60.317 1.00 57.10 P
ATOM 3 OP1 A A1237 11.540 86.475 60.719 1.00 56.53 O
ATOM 4 OP2 A A1237 9.005 86.851 60.810 1.00 58.29 O
ATOM 5 O5' A A1237 10.568 88.774 60.718 1.00 61.01 O
ATOM 6 C5' A A1237 11.849 89.409 60.548 1.00 64.15 C
ATOM 7 C4' A A1237 11.763 90.850 60.970 1.00 66.88 C
ATOM 8 O4' A A1237 10.853 91.547 60.085 1.00 66.81 O
ATOM 9 C3' A A1237 11.171 91.061 62.351 1.00 70.07 C
ATOM 10 O3' A A1237 12.156 90.911 63.356 1.00 77.27 O
ATOM 11 C2' A A1237 10.625 92.478 62.265 1.00 68.64 C
ATOM 12 O2' A A1237 11.611 93.473 62.441 1.00 68.29 O
ATOM 13 C1' A A1237 10.115 92.507 60.823 1.00 67.94 C
ATOM 14 N9 A A1237 8.698 92.171 60.714 1.00 67.63 N
ATOM 15 C8 A A1237 8.115 90.931 60.763 1.00 67.60 C
ATOM 16 N7 A A1237 6.811 90.956 60.657 1.00 67.98 N
ATOM 17 C5 A A1237 6.514 92.304 60.525 1.00 68.49 C
ATOM 18 C6 A A1237 5.297 92.996 60.383 1.00 69.46 C
ATOM 19 N6 A A1237 4.103 92.398 60.353 1.00 69.33 N
ATOM 20 N1 A A1237 5.350 94.340 60.275 1.00 69.77 N
ATOM 21 C2 A A1237 6.549 94.938 60.312 1.00 69.82 C
ATOM 22 N3 A A1237 7.758 94.398 60.447 1.00 68.19 N
ATOM 23 C4 A A1237 7.668 93.063 60.550 1.00 68.05 C
ATOM 24 P U A1238 11.771 90.236 64.763 1.00 83.50 P
ATOM 25 OP1 U A1238 11.933 88.761 64.615 1.00 81.74 O
ATOM 26 OP2 U A1238 10.462 90.791 65.214 1.00 82.28 O
ATOM 27 O5' U A1238 12.927 90.764 65.732 1.00 89.08 O
TER
ATOM 1 O3' A B1237 12.156 90.911 63.356 1.00 77.27 O
ATOM 2 P U B1238 11.771 90.236 64.763 1.00 83.50 P
ATOM 3 OP1 U B1238 11.933 88.761 64.615 1.00 81.74 O
ATOM 4 OP2 U B1238 10.462 90.791 65.214 1.00 82.28 O
ATOM 5 O5' U B1238 12.927 90.764 65.732 1.00 89.08 O
ATOM 6 C5' U B1238 12.719 91.884 66.643 1.00 95.93 C
ATOM 7 C4' U B1238 13.638 93.047 66.291 1.00 99.58 C
ATOM 8 O4' U B1238 14.786 92.552 65.546 1.00100.82 O
ATOM 9 C3' U B1238 13.031 94.121 65.395 1.00100.96 C
ATOM 10 O3' U B1238 12.337 95.105 66.165 1.00100.95 O
ATOM 11 C2' U B1238 14.260 94.725 64.727 1.00102.06 C
ATOM 12 O2' U B1238 14.933 95.654 65.558 1.00102.27 O
ATOM 13 C1' U B1238 15.146 93.486 64.536 1.00102.75 C
ATOM 14 N1 U B1238 15.082 92.807 63.222 1.00103.87 N
ATOM 15 C2 U B1238 14.946 93.576 62.058 1.00104.53 C
ATOM 16 O2 U B1238 14.847 94.796 62.060 1.00105.33 O
ATOM 17 N3 U B1238 14.932 92.856 60.888 1.00104.49 N
ATOM 18 C4 U B1238 15.031 91.486 60.747 1.00104.77 C
ATOM 19 O4 U B1238 15.029 90.993 59.616 1.00103.96 O
ATOM 20 C5 U B1238 15.153 90.765 61.979 1.00104.20 C
ATOM 21 C6 U B1238 15.173 91.428 63.140 1.00103.66 C
ATOM 22 P A B1239 10.730 95.179 66.119 1.00100.94 P
ATOM 23 OP1 A B1239 10.312 96.193 67.119 1.00101.56 O
ATOM 24 OP2 A B1239 10.198 93.793 66.216 1.00101.12 O
ATOM 25 O5' A B1239 10.392 95.758 64.673 1.00 97.48 O
TER
Atoms:
OP1: (11.540,86.475,60.719)
OP2: (9.005,86.851,60.810)
C3': (11.171,91.061,62.351)
C1': (10.115,92.507,60.823)
C5': (11.849,89.409,60.548)
O4': (10.853,91.547,60.085)
C8: (8.115,90.931,60.763)
O2': (11.611,93.473,62.441)
C6: (5.297,92.996,60.383)
C5: (6.514,92.304,60.525)
C4: (7.668,93.063,60.550)
P: (10.345,87.251,60.317)
C4': (11.763,90.850,60.970)
C2': (10.625,92.478,62.265)
C2: (6.549,94.938,60.312)
N1: (5.350,94.340,60.275)
N3: (7.758,94.398,60.447)
N6: (4.103,92.398,60.353)
N7: (6.811,90.956,60.657)
N9: (8.698,92.171,60.714)
O5': (10.568,88.774,60.718)
O3': (12.156,90.911,63.356)
OP2: (9.005,86.851,60.810)
C3': (11.171,91.061,62.351)
C1': (10.115,92.507,60.823)
C5': (11.849,89.409,60.548)
O4': (10.853,91.547,60.085)
C8: (8.115,90.931,60.763)
O2': (11.611,93.473,62.441)
C6: (5.297,92.996,60.383)
C5: (6.514,92.304,60.525)
C4: (7.668,93.063,60.550)
P: (10.345,87.251,60.317)
C4': (11.763,90.850,60.970)
C2': (10.625,92.478,62.265)
C2: (6.549,94.938,60.312)
N1: (5.350,94.340,60.275)
N3: (7.758,94.398,60.447)
N6: (4.103,92.398,60.353)
N7: (6.811,90.956,60.657)
N9: (8.698,92.171,60.714)
O5': (10.568,88.774,60.718)
O3': (12.156,90.911,63.356)
C4: (15.031,91.486,60.747)
N3: (14.932,92.856,60.888)
OP1: (11.933,88.761,64.615)
OP2: (10.462,90.791,65.214)
C2: (14.946,93.576,62.058)
C1': (15.146,93.486,64.536)
C3': (13.031,94.121,65.395)
O5': (12.927,90.764,65.732)
O4': (14.786,92.552,65.546)
C5': (12.719,91.884,66.643)
P: (11.771,90.236,64.763)
C4': (13.638,93.047,66.291)
C2': (14.260,94.725,64.727)
O2': (14.933,95.654,65.558)
N1: (15.082,92.807,63.222)
O4: (15.029,90.993,59.616)
O2: (14.847,94.796,62.060)
C6: (15.173,91.428,63.140)
C5: (15.153,90.765,61.979)
O3': (12.337,95.105,66.165)
N3: (14.932,92.856,60.888)
OP1: (11.933,88.761,64.615)
OP2: (10.462,90.791,65.214)
C2: (14.946,93.576,62.058)
C1': (15.146,93.486,64.536)
C3': (13.031,94.121,65.395)
O5': (12.927,90.764,65.732)
O4': (14.786,92.552,65.546)
C5': (12.719,91.884,66.643)
P: (11.771,90.236,64.763)
C4': (13.638,93.047,66.291)
C2': (14.260,94.725,64.727)
O2': (14.933,95.654,65.558)
N1: (15.082,92.807,63.222)
O4: (15.029,90.993,59.616)
O2: (14.847,94.796,62.060)
C6: (15.173,91.428,63.140)
C5: (15.153,90.765,61.979)
O3': (12.337,95.105,66.165)
Image (generated by PyMOL):