Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:01237:01238
Extra
PDB:
ATOM 1 O3' C A1236 10.408 87.088 58.740 1.00 57.87 O
ATOM 2 P A A1237 10.412 87.155 60.335 1.00 59.39 P
ATOM 3 OP1 A A1237 11.628 86.451 60.805 1.00 60.25 O
ATOM 4 OP2 A A1237 9.080 86.729 60.822 1.00 60.52 O
ATOM 5 O5' A A1237 10.575 88.706 60.644 1.00 62.98 O
ATOM 6 C5' A A1237 11.840 89.367 60.473 1.00 66.55 C
ATOM 7 C4' A A1237 11.725 90.808 60.887 1.00 69.71 C
ATOM 8 O4' A A1237 10.801 91.479 60.000 1.00 69.50 O
ATOM 9 C3' A A1237 11.145 91.036 62.271 1.00 72.92 C
ATOM 10 O3' A A1237 12.145 90.927 63.270 1.00 80.38 O
ATOM 11 C2' A A1237 10.593 92.450 62.164 1.00 71.68 C
ATOM 12 O2' A A1237 11.575 93.453 62.310 1.00 71.67 O
ATOM 13 C1' A A1237 10.073 92.454 60.726 1.00 71.17 C
ATOM 14 N9 A A1237 8.654 92.124 60.640 1.00 70.94 N
ATOM 15 C8 A A1237 8.060 90.889 60.691 1.00 70.50 C
ATOM 16 N7 A A1237 6.755 90.930 60.603 1.00 71.08 N
ATOM 17 C5 A A1237 6.472 92.282 60.481 1.00 71.12 C
ATOM 18 C6 A A1237 5.263 92.988 60.355 1.00 71.70 C
ATOM 19 N6 A A1237 4.062 92.407 60.332 1.00 72.77 N
ATOM 20 N1 A A1237 5.331 94.332 60.256 1.00 72.16 N
ATOM 21 C2 A A1237 6.535 94.916 60.289 1.00 72.48 C
ATOM 22 N3 A A1237 7.737 94.362 60.407 1.00 71.08 N
ATOM 23 C4 A A1237 7.633 93.027 60.499 1.00 70.82 C
ATOM 24 P U A1238 11.840 90.126 64.631 1.00 86.68 P
ATOM 25 OP1 U A1238 11.943 88.669 64.320 1.00 85.20 O
ATOM 26 OP2 U A1238 10.588 90.665 65.240 1.00 85.65 O
ATOM 27 O5' U A1238 13.077 90.515 65.564 1.00 91.34 O
TER
ATOM 1 O3' A B1237 12.145 90.927 63.270 1.00 80.38 O
ATOM 2 P U B1238 11.840 90.126 64.631 1.00 86.68 P
ATOM 3 OP1 U B1238 11.943 88.669 64.320 1.00 85.20 O
ATOM 4 OP2 U B1238 10.588 90.665 65.240 1.00 85.65 O
ATOM 5 O5' U B1238 13.077 90.515 65.564 1.00 91.34 O
ATOM 6 C5' U B1238 12.986 91.568 66.570 1.00 97.21 C
ATOM 7 C4' U B1238 13.838 92.768 66.175 1.00100.37 C
ATOM 8 O4' U B1238 14.962 92.314 65.369 1.00102.33 O
ATOM 9 C3' U B1238 13.143 93.823 65.321 1.00100.97 C
ATOM 10 O3' U B1238 12.489 94.789 66.149 1.00 99.46 O
ATOM 11 C2' U B1238 14.303 94.453 64.558 1.00102.42 C
ATOM 12 O2' U B1238 15.003 95.413 65.330 1.00102.65 O
ATOM 13 C1' U B1238 15.217 93.242 64.324 1.00103.69 C
ATOM 14 N1 U B1238 15.115 92.531 63.029 1.00105.08 N
ATOM 15 C2 U B1238 14.930 93.270 61.853 1.00105.90 C
ATOM 16 O2 U B1238 14.808 94.488 61.831 1.00106.86 O
ATOM 17 N3 U B1238 14.893 92.520 60.700 1.00106.05 N
ATOM 18 C4 U B1238 15.012 91.148 60.588 1.00106.13 C
ATOM 19 O4 U B1238 14.988 90.626 59.470 1.00105.61 O
ATOM 20 C5 U B1238 15.181 90.459 61.833 1.00105.36 C
ATOM 21 C6 U B1238 15.224 91.151 62.977 1.00104.79 C
ATOM 22 P A B1239 10.883 94.852 66.201 1.00 98.69 P
ATOM 23 OP1 A B1239 10.509 95.778 67.299 1.00 99.03 O
ATOM 24 OP2 A B1239 10.358 93.460 66.210 1.00 99.04 O
ATOM 25 O5' A B1239 10.476 95.540 64.825 1.00 95.43 O
TER
ATOM 2 P A A1237 10.412 87.155 60.335 1.00 59.39 P
ATOM 3 OP1 A A1237 11.628 86.451 60.805 1.00 60.25 O
ATOM 4 OP2 A A1237 9.080 86.729 60.822 1.00 60.52 O
ATOM 5 O5' A A1237 10.575 88.706 60.644 1.00 62.98 O
ATOM 6 C5' A A1237 11.840 89.367 60.473 1.00 66.55 C
ATOM 7 C4' A A1237 11.725 90.808 60.887 1.00 69.71 C
ATOM 8 O4' A A1237 10.801 91.479 60.000 1.00 69.50 O
ATOM 9 C3' A A1237 11.145 91.036 62.271 1.00 72.92 C
ATOM 10 O3' A A1237 12.145 90.927 63.270 1.00 80.38 O
ATOM 11 C2' A A1237 10.593 92.450 62.164 1.00 71.68 C
ATOM 12 O2' A A1237 11.575 93.453 62.310 1.00 71.67 O
ATOM 13 C1' A A1237 10.073 92.454 60.726 1.00 71.17 C
ATOM 14 N9 A A1237 8.654 92.124 60.640 1.00 70.94 N
ATOM 15 C8 A A1237 8.060 90.889 60.691 1.00 70.50 C
ATOM 16 N7 A A1237 6.755 90.930 60.603 1.00 71.08 N
ATOM 17 C5 A A1237 6.472 92.282 60.481 1.00 71.12 C
ATOM 18 C6 A A1237 5.263 92.988 60.355 1.00 71.70 C
ATOM 19 N6 A A1237 4.062 92.407 60.332 1.00 72.77 N
ATOM 20 N1 A A1237 5.331 94.332 60.256 1.00 72.16 N
ATOM 21 C2 A A1237 6.535 94.916 60.289 1.00 72.48 C
ATOM 22 N3 A A1237 7.737 94.362 60.407 1.00 71.08 N
ATOM 23 C4 A A1237 7.633 93.027 60.499 1.00 70.82 C
ATOM 24 P U A1238 11.840 90.126 64.631 1.00 86.68 P
ATOM 25 OP1 U A1238 11.943 88.669 64.320 1.00 85.20 O
ATOM 26 OP2 U A1238 10.588 90.665 65.240 1.00 85.65 O
ATOM 27 O5' U A1238 13.077 90.515 65.564 1.00 91.34 O
TER
ATOM 1 O3' A B1237 12.145 90.927 63.270 1.00 80.38 O
ATOM 2 P U B1238 11.840 90.126 64.631 1.00 86.68 P
ATOM 3 OP1 U B1238 11.943 88.669 64.320 1.00 85.20 O
ATOM 4 OP2 U B1238 10.588 90.665 65.240 1.00 85.65 O
ATOM 5 O5' U B1238 13.077 90.515 65.564 1.00 91.34 O
ATOM 6 C5' U B1238 12.986 91.568 66.570 1.00 97.21 C
ATOM 7 C4' U B1238 13.838 92.768 66.175 1.00100.37 C
ATOM 8 O4' U B1238 14.962 92.314 65.369 1.00102.33 O
ATOM 9 C3' U B1238 13.143 93.823 65.321 1.00100.97 C
ATOM 10 O3' U B1238 12.489 94.789 66.149 1.00 99.46 O
ATOM 11 C2' U B1238 14.303 94.453 64.558 1.00102.42 C
ATOM 12 O2' U B1238 15.003 95.413 65.330 1.00102.65 O
ATOM 13 C1' U B1238 15.217 93.242 64.324 1.00103.69 C
ATOM 14 N1 U B1238 15.115 92.531 63.029 1.00105.08 N
ATOM 15 C2 U B1238 14.930 93.270 61.853 1.00105.90 C
ATOM 16 O2 U B1238 14.808 94.488 61.831 1.00106.86 O
ATOM 17 N3 U B1238 14.893 92.520 60.700 1.00106.05 N
ATOM 18 C4 U B1238 15.012 91.148 60.588 1.00106.13 C
ATOM 19 O4 U B1238 14.988 90.626 59.470 1.00105.61 O
ATOM 20 C5 U B1238 15.181 90.459 61.833 1.00105.36 C
ATOM 21 C6 U B1238 15.224 91.151 62.977 1.00104.79 C
ATOM 22 P A B1239 10.883 94.852 66.201 1.00 98.69 P
ATOM 23 OP1 A B1239 10.509 95.778 67.299 1.00 99.03 O
ATOM 24 OP2 A B1239 10.358 93.460 66.210 1.00 99.04 O
ATOM 25 O5' A B1239 10.476 95.540 64.825 1.00 95.43 O
TER
Atoms:
OP1: (11.628,86.451,60.805)
OP2: (9.080,86.729,60.822)
C3': (11.145,91.036,62.271)
C1': (10.073,92.454,60.726)
C5': (11.840,89.367,60.473)
O4': (10.801,91.479,60.000)
C8: (8.060,90.889,60.691)
O2': (11.575,93.453,62.310)
C6: (5.263,92.988,60.355)
C5: (6.472,92.282,60.481)
C4: (7.633,93.027,60.499)
P: (10.412,87.155,60.335)
C4': (11.725,90.808,60.887)
C2': (10.593,92.450,62.164)
C2: (6.535,94.916,60.289)
N1: (5.331,94.332,60.256)
N3: (7.737,94.362,60.407)
N6: (4.062,92.407,60.332)
N7: (6.755,90.930,60.603)
N9: (8.654,92.124,60.640)
O5': (10.575,88.706,60.644)
O3': (12.145,90.927,63.270)
OP2: (9.080,86.729,60.822)
C3': (11.145,91.036,62.271)
C1': (10.073,92.454,60.726)
C5': (11.840,89.367,60.473)
O4': (10.801,91.479,60.000)
C8: (8.060,90.889,60.691)
O2': (11.575,93.453,62.310)
C6: (5.263,92.988,60.355)
C5: (6.472,92.282,60.481)
C4: (7.633,93.027,60.499)
P: (10.412,87.155,60.335)
C4': (11.725,90.808,60.887)
C2': (10.593,92.450,62.164)
C2: (6.535,94.916,60.289)
N1: (5.331,94.332,60.256)
N3: (7.737,94.362,60.407)
N6: (4.062,92.407,60.332)
N7: (6.755,90.930,60.603)
N9: (8.654,92.124,60.640)
O5': (10.575,88.706,60.644)
O3': (12.145,90.927,63.270)
C4: (15.012,91.148,60.588)
N3: (14.893,92.520,60.700)
OP1: (11.943,88.669,64.320)
OP2: (10.588,90.665,65.240)
C2: (14.930,93.270,61.853)
C1': (15.217,93.242,64.324)
C3': (13.143,93.823,65.321)
O5': (13.077,90.515,65.564)
O4': (14.962,92.314,65.369)
C5': (12.986,91.568,66.570)
P: (11.840,90.126,64.631)
C4': (13.838,92.768,66.175)
C2': (14.303,94.453,64.558)
O2': (15.003,95.413,65.330)
N1: (15.115,92.531,63.029)
O4: (14.988,90.626,59.470)
O2: (14.808,94.488,61.831)
C6: (15.224,91.151,62.977)
C5: (15.181,90.459,61.833)
O3': (12.489,94.789,66.149)
N3: (14.893,92.520,60.700)
OP1: (11.943,88.669,64.320)
OP2: (10.588,90.665,65.240)
C2: (14.930,93.270,61.853)
C1': (15.217,93.242,64.324)
C3': (13.143,93.823,65.321)
O5': (13.077,90.515,65.564)
O4': (14.962,92.314,65.369)
C5': (12.986,91.568,66.570)
P: (11.840,90.126,64.631)
C4': (13.838,92.768,66.175)
C2': (14.303,94.453,64.558)
O2': (15.003,95.413,65.330)
N1: (15.115,92.531,63.029)
O4: (14.988,90.626,59.470)
O2: (14.808,94.488,61.831)
C6: (15.224,91.151,62.977)
C5: (15.181,90.459,61.833)
O3': (12.489,94.789,66.149)
Image (generated by PyMOL):