Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:01237:01238
Extra
PDB:
ATOM 1 O3' C A1236 10.294 87.265 58.636 1.00 62.50 O
ATOM 2 P A A1237 10.330 87.278 60.230 1.00 64.69 P
ATOM 3 OP1 A A1237 11.551 86.554 60.647 1.00 64.56 O
ATOM 4 OP2 A A1237 9.008 86.838 60.729 1.00 65.10 O
ATOM 5 O5' A A1237 10.501 88.819 60.585 1.00 68.43 O
ATOM 6 C5' A A1237 11.779 89.464 60.465 1.00 73.73 C
ATOM 7 C4' A A1237 11.673 90.904 60.886 1.00 76.91 C
ATOM 8 O4' A A1237 10.781 91.590 59.978 1.00 77.69 O
ATOM 9 C3' A A1237 11.069 91.136 62.260 1.00 79.77 C
ATOM 10 O3' A A1237 12.060 91.024 63.271 1.00 87.11 O
ATOM 11 C2' A A1237 10.527 92.554 62.141 1.00 78.38 C
ATOM 12 O2' A A1237 11.511 93.550 62.294 1.00 77.68 O
ATOM 13 C1' A A1237 10.042 92.564 60.690 1.00 78.47 C
ATOM 14 N9 A A1237 8.628 92.234 60.580 1.00 78.26 N
ATOM 15 C8 A A1237 8.025 91.001 60.605 1.00 77.53 C
ATOM 16 N7 A A1237 6.720 91.053 60.524 1.00 78.02 N
ATOM 17 C5 A A1237 6.448 92.410 60.430 1.00 78.98 C
ATOM 18 C6 A A1237 5.246 93.130 60.333 1.00 80.31 C
ATOM 19 N6 A A1237 4.040 92.560 60.315 1.00 81.78 N
ATOM 20 N1 A A1237 5.325 94.476 60.257 1.00 81.29 N
ATOM 21 C2 A A1237 6.537 95.049 60.282 1.00 81.38 C
ATOM 22 N3 A A1237 7.734 94.480 60.376 1.00 79.65 N
ATOM 23 C4 A A1237 7.616 93.145 60.449 1.00 78.60 C
ATOM 24 P U A1238 11.752 90.200 64.619 1.00 92.91 P
ATOM 25 OP1 U A1238 12.038 88.761 64.345 1.00 91.27 O
ATOM 26 OP2 U A1238 10.412 90.602 65.129 1.00 93.09 O
ATOM 27 O5' U A1238 12.862 90.732 65.639 1.00 97.85 O
TER
ATOM 1 O3' A B1237 12.060 91.024 63.271 1.00 87.11 O
ATOM 2 P U B1238 11.752 90.200 64.619 1.00 92.91 P
ATOM 3 OP1 U B1238 12.038 88.761 64.345 1.00 91.27 O
ATOM 4 OP2 U B1238 10.412 90.602 65.129 1.00 93.09 O
ATOM 5 O5' U B1238 12.862 90.732 65.639 1.00 97.85 O
ATOM 6 C5' U B1238 12.597 91.826 66.573 1.00103.10 C
ATOM 7 C4' U B1238 13.490 93.025 66.270 1.00105.95 C
ATOM 8 O4' U B1238 14.688 92.572 65.579 1.00107.41 O
ATOM 9 C3' U B1238 12.880 94.086 65.358 1.00106.33 C
ATOM 10 O3' U B1238 12.157 95.061 66.118 1.00104.83 O
ATOM 11 C2' U B1238 14.103 94.700 64.685 1.00107.42 C
ATOM 12 O2' U B1238 14.745 95.673 65.491 1.00107.63 O
ATOM 13 C1' U B1238 15.020 93.477 64.534 1.00108.43 C
ATOM 14 N1 U B1238 14.980 92.739 63.249 1.00109.49 N
ATOM 15 C2 U B1238 14.874 93.456 62.052 1.00110.44 C
ATOM 16 O2 U B1238 14.794 94.678 62.001 1.00112.06 O
ATOM 17 N3 U B1238 14.868 92.683 60.914 1.00110.10 N
ATOM 18 C4 U B1238 14.952 91.308 60.834 1.00109.32 C
ATOM 19 O4 U B1238 14.938 90.763 59.727 1.00108.09 O
ATOM 20 C5 U B1238 15.051 90.642 62.096 1.00108.91 C
ATOM 21 C6 U B1238 15.061 91.356 63.228 1.00109.10 C
ATOM 22 P A B1239 10.559 95.178 65.966 1.00103.73 P
ATOM 23 OP1 A B1239 10.070 96.115 67.006 1.00103.91 O
ATOM 24 OP2 A B1239 9.999 93.803 65.901 1.00104.47 O
ATOM 25 O5' A B1239 10.354 95.869 64.548 1.00100.93 O
TER
ATOM 2 P A A1237 10.330 87.278 60.230 1.00 64.69 P
ATOM 3 OP1 A A1237 11.551 86.554 60.647 1.00 64.56 O
ATOM 4 OP2 A A1237 9.008 86.838 60.729 1.00 65.10 O
ATOM 5 O5' A A1237 10.501 88.819 60.585 1.00 68.43 O
ATOM 6 C5' A A1237 11.779 89.464 60.465 1.00 73.73 C
ATOM 7 C4' A A1237 11.673 90.904 60.886 1.00 76.91 C
ATOM 8 O4' A A1237 10.781 91.590 59.978 1.00 77.69 O
ATOM 9 C3' A A1237 11.069 91.136 62.260 1.00 79.77 C
ATOM 10 O3' A A1237 12.060 91.024 63.271 1.00 87.11 O
ATOM 11 C2' A A1237 10.527 92.554 62.141 1.00 78.38 C
ATOM 12 O2' A A1237 11.511 93.550 62.294 1.00 77.68 O
ATOM 13 C1' A A1237 10.042 92.564 60.690 1.00 78.47 C
ATOM 14 N9 A A1237 8.628 92.234 60.580 1.00 78.26 N
ATOM 15 C8 A A1237 8.025 91.001 60.605 1.00 77.53 C
ATOM 16 N7 A A1237 6.720 91.053 60.524 1.00 78.02 N
ATOM 17 C5 A A1237 6.448 92.410 60.430 1.00 78.98 C
ATOM 18 C6 A A1237 5.246 93.130 60.333 1.00 80.31 C
ATOM 19 N6 A A1237 4.040 92.560 60.315 1.00 81.78 N
ATOM 20 N1 A A1237 5.325 94.476 60.257 1.00 81.29 N
ATOM 21 C2 A A1237 6.537 95.049 60.282 1.00 81.38 C
ATOM 22 N3 A A1237 7.734 94.480 60.376 1.00 79.65 N
ATOM 23 C4 A A1237 7.616 93.145 60.449 1.00 78.60 C
ATOM 24 P U A1238 11.752 90.200 64.619 1.00 92.91 P
ATOM 25 OP1 U A1238 12.038 88.761 64.345 1.00 91.27 O
ATOM 26 OP2 U A1238 10.412 90.602 65.129 1.00 93.09 O
ATOM 27 O5' U A1238 12.862 90.732 65.639 1.00 97.85 O
TER
ATOM 1 O3' A B1237 12.060 91.024 63.271 1.00 87.11 O
ATOM 2 P U B1238 11.752 90.200 64.619 1.00 92.91 P
ATOM 3 OP1 U B1238 12.038 88.761 64.345 1.00 91.27 O
ATOM 4 OP2 U B1238 10.412 90.602 65.129 1.00 93.09 O
ATOM 5 O5' U B1238 12.862 90.732 65.639 1.00 97.85 O
ATOM 6 C5' U B1238 12.597 91.826 66.573 1.00103.10 C
ATOM 7 C4' U B1238 13.490 93.025 66.270 1.00105.95 C
ATOM 8 O4' U B1238 14.688 92.572 65.579 1.00107.41 O
ATOM 9 C3' U B1238 12.880 94.086 65.358 1.00106.33 C
ATOM 10 O3' U B1238 12.157 95.061 66.118 1.00104.83 O
ATOM 11 C2' U B1238 14.103 94.700 64.685 1.00107.42 C
ATOM 12 O2' U B1238 14.745 95.673 65.491 1.00107.63 O
ATOM 13 C1' U B1238 15.020 93.477 64.534 1.00108.43 C
ATOM 14 N1 U B1238 14.980 92.739 63.249 1.00109.49 N
ATOM 15 C2 U B1238 14.874 93.456 62.052 1.00110.44 C
ATOM 16 O2 U B1238 14.794 94.678 62.001 1.00112.06 O
ATOM 17 N3 U B1238 14.868 92.683 60.914 1.00110.10 N
ATOM 18 C4 U B1238 14.952 91.308 60.834 1.00109.32 C
ATOM 19 O4 U B1238 14.938 90.763 59.727 1.00108.09 O
ATOM 20 C5 U B1238 15.051 90.642 62.096 1.00108.91 C
ATOM 21 C6 U B1238 15.061 91.356 63.228 1.00109.10 C
ATOM 22 P A B1239 10.559 95.178 65.966 1.00103.73 P
ATOM 23 OP1 A B1239 10.070 96.115 67.006 1.00103.91 O
ATOM 24 OP2 A B1239 9.999 93.803 65.901 1.00104.47 O
ATOM 25 O5' A B1239 10.354 95.869 64.548 1.00100.93 O
TER
Atoms:
OP1: (11.551,86.554,60.647)
OP2: (9.008,86.838,60.729)
C3': (11.069,91.136,62.260)
C1': (10.042,92.564,60.690)
C5': (11.779,89.464,60.465)
O4': (10.781,91.590,59.978)
C8: (8.025,91.001,60.605)
O2': (11.511,93.550,62.294)
C6: (5.246,93.130,60.333)
C5: (6.448,92.410,60.430)
C4: (7.616,93.145,60.449)
P: (10.330,87.278,60.230)
C4': (11.673,90.904,60.886)
C2': (10.527,92.554,62.141)
C2: (6.537,95.049,60.282)
N1: (5.325,94.476,60.257)
N3: (7.734,94.480,60.376)
N6: (4.040,92.560,60.315)
N7: (6.720,91.053,60.524)
N9: (8.628,92.234,60.580)
O5': (10.501,88.819,60.585)
O3': (12.060,91.024,63.271)
OP2: (9.008,86.838,60.729)
C3': (11.069,91.136,62.260)
C1': (10.042,92.564,60.690)
C5': (11.779,89.464,60.465)
O4': (10.781,91.590,59.978)
C8: (8.025,91.001,60.605)
O2': (11.511,93.550,62.294)
C6: (5.246,93.130,60.333)
C5: (6.448,92.410,60.430)
C4: (7.616,93.145,60.449)
P: (10.330,87.278,60.230)
C4': (11.673,90.904,60.886)
C2': (10.527,92.554,62.141)
C2: (6.537,95.049,60.282)
N1: (5.325,94.476,60.257)
N3: (7.734,94.480,60.376)
N6: (4.040,92.560,60.315)
N7: (6.720,91.053,60.524)
N9: (8.628,92.234,60.580)
O5': (10.501,88.819,60.585)
O3': (12.060,91.024,63.271)
C4: (14.952,91.308,60.834)
N3: (14.868,92.683,60.914)
OP1: (12.038,88.761,64.345)
OP2: (10.412,90.602,65.129)
C2: (14.874,93.456,62.052)
C1': (15.020,93.477,64.534)
C3': (12.880,94.086,65.358)
O5': (12.862,90.732,65.639)
O4': (14.688,92.572,65.579)
C5': (12.597,91.826,66.573)
P: (11.752,90.200,64.619)
C4': (13.490,93.025,66.270)
C2': (14.103,94.700,64.685)
O2': (14.745,95.673,65.491)
N1: (14.980,92.739,63.249)
O4: (14.938,90.763,59.727)
O2: (14.794,94.678,62.001)
C6: (15.061,91.356,63.228)
C5: (15.051,90.642,62.096)
O3': (12.157,95.061,66.118)
N3: (14.868,92.683,60.914)
OP1: (12.038,88.761,64.345)
OP2: (10.412,90.602,65.129)
C2: (14.874,93.456,62.052)
C1': (15.020,93.477,64.534)
C3': (12.880,94.086,65.358)
O5': (12.862,90.732,65.639)
O4': (14.688,92.572,65.579)
C5': (12.597,91.826,66.573)
P: (11.752,90.200,64.619)
C4': (13.490,93.025,66.270)
C2': (14.103,94.700,64.685)
O2': (14.745,95.673,65.491)
N1: (14.980,92.739,63.249)
O4: (14.938,90.763,59.727)
O2: (14.794,94.678,62.001)
C6: (15.061,91.356,63.228)
C5: (15.051,90.642,62.096)
O3': (12.157,95.061,66.118)
Image (generated by PyMOL):