Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:01237:01238
Extra
PDB:
ATOM 1 O3' C A1236 10.449 87.313 58.995 1.00 68.28 O
ATOM 2 P A A1237 10.443 87.375 60.590 1.00 68.13 P
ATOM 3 OP1 A A1237 11.642 86.647 61.066 1.00 68.55 O
ATOM 4 OP2 A A1237 9.104 86.966 61.061 1.00 68.82 O
ATOM 5 O5' A A1237 10.619 88.924 60.901 1.00 71.88 O
ATOM 6 C5' A A1237 11.887 89.574 60.716 1.00 76.60 C
ATOM 7 C4' A A1237 11.784 91.018 61.117 1.00 79.94 C
ATOM 8 O4' A A1237 10.863 91.683 60.223 1.00 80.86 O
ATOM 9 C3' A A1237 11.207 91.259 62.501 1.00 82.90 C
ATOM 10 O3' A A1237 12.210 91.148 63.502 1.00 89.27 O
ATOM 11 C2' A A1237 10.647 92.669 62.377 1.00 82.10 C
ATOM 12 O2' A A1237 11.615 93.688 62.493 1.00 82.80 O
ATOM 13 C1' A A1237 10.122 92.651 60.941 1.00 81.69 C
ATOM 14 N9 A A1237 8.714 92.281 60.879 1.00 81.96 N
ATOM 15 C8 A A1237 8.154 91.032 60.970 1.00 81.66 C
ATOM 16 N7 A A1237 6.848 91.039 60.926 1.00 82.03 N
ATOM 17 C5 A A1237 6.527 92.381 60.784 1.00 83.10 C
ATOM 18 C6 A A1237 5.301 93.056 60.692 1.00 84.52 C
ATOM 19 N6 A A1237 4.112 92.445 60.737 1.00 86.00 N
ATOM 20 N1 A A1237 5.334 94.400 60.557 1.00 85.18 N
ATOM 21 C2 A A1237 6.525 95.011 60.525 1.00 83.98 C
ATOM 22 N3 A A1237 7.740 94.487 60.611 1.00 83.26 N
ATOM 23 C4 A A1237 7.669 93.153 60.741 1.00 82.47 C
ATOM 24 P U A1238 11.873 90.433 64.905 1.00 94.38 P
ATOM 25 OP1 U A1238 12.062 88.964 64.719 1.00 92.40 O
ATOM 26 OP2 U A1238 10.568 90.956 65.403 1.00 93.80 O
ATOM 27 O5' U A1238 13.035 90.954 65.870 1.00 99.09 O
TER
ATOM 1 O3' A B1237 12.210 91.148 63.502 1.00 89.27 O
ATOM 2 P U B1238 11.873 90.433 64.905 1.00 94.38 P
ATOM 3 OP1 U B1238 12.062 88.964 64.719 1.00 92.40 O
ATOM 4 OP2 U B1238 10.568 90.956 65.403 1.00 93.80 O
ATOM 5 O5' U B1238 13.035 90.954 65.870 1.00 99.09 O
ATOM 6 C5' U B1238 12.822 92.032 66.832 1.00105.73 C
ATOM 7 C4' U B1238 13.722 93.220 66.516 1.00109.91 C
ATOM 8 O4' U B1238 14.892 92.753 65.784 1.00112.05 O
ATOM 9 C3' U B1238 13.103 94.294 65.624 1.00110.94 C
ATOM 10 O3' U B1238 12.409 95.274 66.399 1.00109.33 O
ATOM 11 C2' U B1238 14.316 94.895 64.925 1.00112.14 C
ATOM 12 O2' U B1238 14.998 95.841 65.730 1.00112.79 O
ATOM 13 C1' U B1238 15.199 93.654 64.727 1.00113.53 C
ATOM 14 N1 U B1238 15.088 92.917 63.445 1.00114.61 N
ATOM 15 C2 U B1238 14.727 93.604 62.274 1.00115.22 C
ATOM 16 O2 U B1238 14.473 94.802 62.239 1.00116.04 O
ATOM 17 N3 U B1238 14.678 92.826 61.140 1.00115.07 N
ATOM 18 C4 U B1238 14.938 91.473 61.040 1.00114.87 C
ATOM 19 O4 U B1238 14.852 90.920 59.940 1.00114.22 O
ATOM 20 C5 U B1238 15.291 90.837 62.275 1.00114.70 C
ATOM 21 C6 U B1238 15.352 91.557 63.402 1.00114.36 C
ATOM 22 P A B1239 10.809 95.379 66.311 1.00108.31 P
ATOM 23 OP1 A B1239 10.389 96.387 67.311 1.00109.00 O
ATOM 24 OP2 A B1239 10.249 94.003 66.383 1.00108.71 O
ATOM 25 O5' A B1239 10.532 95.974 64.858 1.00106.27 O
TER
ATOM 2 P A A1237 10.443 87.375 60.590 1.00 68.13 P
ATOM 3 OP1 A A1237 11.642 86.647 61.066 1.00 68.55 O
ATOM 4 OP2 A A1237 9.104 86.966 61.061 1.00 68.82 O
ATOM 5 O5' A A1237 10.619 88.924 60.901 1.00 71.88 O
ATOM 6 C5' A A1237 11.887 89.574 60.716 1.00 76.60 C
ATOM 7 C4' A A1237 11.784 91.018 61.117 1.00 79.94 C
ATOM 8 O4' A A1237 10.863 91.683 60.223 1.00 80.86 O
ATOM 9 C3' A A1237 11.207 91.259 62.501 1.00 82.90 C
ATOM 10 O3' A A1237 12.210 91.148 63.502 1.00 89.27 O
ATOM 11 C2' A A1237 10.647 92.669 62.377 1.00 82.10 C
ATOM 12 O2' A A1237 11.615 93.688 62.493 1.00 82.80 O
ATOM 13 C1' A A1237 10.122 92.651 60.941 1.00 81.69 C
ATOM 14 N9 A A1237 8.714 92.281 60.879 1.00 81.96 N
ATOM 15 C8 A A1237 8.154 91.032 60.970 1.00 81.66 C
ATOM 16 N7 A A1237 6.848 91.039 60.926 1.00 82.03 N
ATOM 17 C5 A A1237 6.527 92.381 60.784 1.00 83.10 C
ATOM 18 C6 A A1237 5.301 93.056 60.692 1.00 84.52 C
ATOM 19 N6 A A1237 4.112 92.445 60.737 1.00 86.00 N
ATOM 20 N1 A A1237 5.334 94.400 60.557 1.00 85.18 N
ATOM 21 C2 A A1237 6.525 95.011 60.525 1.00 83.98 C
ATOM 22 N3 A A1237 7.740 94.487 60.611 1.00 83.26 N
ATOM 23 C4 A A1237 7.669 93.153 60.741 1.00 82.47 C
ATOM 24 P U A1238 11.873 90.433 64.905 1.00 94.38 P
ATOM 25 OP1 U A1238 12.062 88.964 64.719 1.00 92.40 O
ATOM 26 OP2 U A1238 10.568 90.956 65.403 1.00 93.80 O
ATOM 27 O5' U A1238 13.035 90.954 65.870 1.00 99.09 O
TER
ATOM 1 O3' A B1237 12.210 91.148 63.502 1.00 89.27 O
ATOM 2 P U B1238 11.873 90.433 64.905 1.00 94.38 P
ATOM 3 OP1 U B1238 12.062 88.964 64.719 1.00 92.40 O
ATOM 4 OP2 U B1238 10.568 90.956 65.403 1.00 93.80 O
ATOM 5 O5' U B1238 13.035 90.954 65.870 1.00 99.09 O
ATOM 6 C5' U B1238 12.822 92.032 66.832 1.00105.73 C
ATOM 7 C4' U B1238 13.722 93.220 66.516 1.00109.91 C
ATOM 8 O4' U B1238 14.892 92.753 65.784 1.00112.05 O
ATOM 9 C3' U B1238 13.103 94.294 65.624 1.00110.94 C
ATOM 10 O3' U B1238 12.409 95.274 66.399 1.00109.33 O
ATOM 11 C2' U B1238 14.316 94.895 64.925 1.00112.14 C
ATOM 12 O2' U B1238 14.998 95.841 65.730 1.00112.79 O
ATOM 13 C1' U B1238 15.199 93.654 64.727 1.00113.53 C
ATOM 14 N1 U B1238 15.088 92.917 63.445 1.00114.61 N
ATOM 15 C2 U B1238 14.727 93.604 62.274 1.00115.22 C
ATOM 16 O2 U B1238 14.473 94.802 62.239 1.00116.04 O
ATOM 17 N3 U B1238 14.678 92.826 61.140 1.00115.07 N
ATOM 18 C4 U B1238 14.938 91.473 61.040 1.00114.87 C
ATOM 19 O4 U B1238 14.852 90.920 59.940 1.00114.22 O
ATOM 20 C5 U B1238 15.291 90.837 62.275 1.00114.70 C
ATOM 21 C6 U B1238 15.352 91.557 63.402 1.00114.36 C
ATOM 22 P A B1239 10.809 95.379 66.311 1.00108.31 P
ATOM 23 OP1 A B1239 10.389 96.387 67.311 1.00109.00 O
ATOM 24 OP2 A B1239 10.249 94.003 66.383 1.00108.71 O
ATOM 25 O5' A B1239 10.532 95.974 64.858 1.00106.27 O
TER
Atoms:
OP1: (11.642,86.647,61.066)
OP2: (9.104,86.966,61.061)
C3': (11.207,91.259,62.501)
C1': (10.122,92.651,60.941)
C5': (11.887,89.574,60.716)
O4': (10.863,91.683,60.223)
C8: (8.154,91.032,60.970)
O2': (11.615,93.688,62.493)
C6: (5.301,93.056,60.692)
C5: (6.527,92.381,60.784)
C4: (7.669,93.153,60.741)
P: (10.443,87.375,60.590)
C4': (11.784,91.018,61.117)
C2': (10.647,92.669,62.377)
C2: (6.525,95.011,60.525)
N1: (5.334,94.400,60.557)
N3: (7.740,94.487,60.611)
N6: (4.112,92.445,60.737)
N7: (6.848,91.039,60.926)
N9: (8.714,92.281,60.879)
O5': (10.619,88.924,60.901)
O3': (12.210,91.148,63.502)
OP2: (9.104,86.966,61.061)
C3': (11.207,91.259,62.501)
C1': (10.122,92.651,60.941)
C5': (11.887,89.574,60.716)
O4': (10.863,91.683,60.223)
C8: (8.154,91.032,60.970)
O2': (11.615,93.688,62.493)
C6: (5.301,93.056,60.692)
C5: (6.527,92.381,60.784)
C4: (7.669,93.153,60.741)
P: (10.443,87.375,60.590)
C4': (11.784,91.018,61.117)
C2': (10.647,92.669,62.377)
C2: (6.525,95.011,60.525)
N1: (5.334,94.400,60.557)
N3: (7.740,94.487,60.611)
N6: (4.112,92.445,60.737)
N7: (6.848,91.039,60.926)
N9: (8.714,92.281,60.879)
O5': (10.619,88.924,60.901)
O3': (12.210,91.148,63.502)
C4: (14.938,91.473,61.040)
N3: (14.678,92.826,61.140)
OP1: (12.062,88.964,64.719)
OP2: (10.568,90.956,65.403)
C2: (14.727,93.604,62.274)
C1': (15.199,93.654,64.727)
C3': (13.103,94.294,65.624)
O5': (13.035,90.954,65.870)
O4': (14.892,92.753,65.784)
C5': (12.822,92.032,66.832)
P: (11.873,90.433,64.905)
C4': (13.722,93.220,66.516)
C2': (14.316,94.895,64.925)
O2': (14.998,95.841,65.730)
N1: (15.088,92.917,63.445)
O4: (14.852,90.920,59.940)
O2: (14.473,94.802,62.239)
C6: (15.352,91.557,63.402)
C5: (15.291,90.837,62.275)
O3': (12.409,95.274,66.399)
N3: (14.678,92.826,61.140)
OP1: (12.062,88.964,64.719)
OP2: (10.568,90.956,65.403)
C2: (14.727,93.604,62.274)
C1': (15.199,93.654,64.727)
C3': (13.103,94.294,65.624)
O5': (13.035,90.954,65.870)
O4': (14.892,92.753,65.784)
C5': (12.822,92.032,66.832)
P: (11.873,90.433,64.905)
C4': (13.722,93.220,66.516)
C2': (14.316,94.895,64.925)
O2': (14.998,95.841,65.730)
N1: (15.088,92.917,63.445)
O4: (14.852,90.920,59.940)
O2: (14.473,94.802,62.239)
C6: (15.352,91.557,63.402)
C5: (15.291,90.837,62.275)
O3': (12.409,95.274,66.399)
Image (generated by PyMOL):